Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40048
         (248 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53460.1 68418.m06644 glutamate synthase [NADH], chloroplast,...    27   1.7  
At1g30400.1 68414.m03716 glutathione S-conjugate ABC transporter...    26   3.0  
At5g44250.1 68418.m05413 expressed protein contains Pfam PF05705...    26   4.0  
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ...    25   5.3  
At1g10330.1 68414.m01163 pentatricopeptide (PPR) repeat-containi...    25   5.3  
At3g23640.1 68416.m02973 glycosyl hydrolase family 31 protein si...    25   7.0  
At3g22180.1 68416.m02799 zinc finger (DHHC type) family protein ...    25   7.0  
At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family pr...    25   9.2  
At3g58050.1 68416.m06471 expressed protein                             25   9.2  
At1g68800.1 68414.m07865 TCP family transcription factor, putati...    25   9.2  

>At5g53460.1 68418.m06644 glutamate synthase [NADH], chloroplast,
           putative similar to SP|Q03460 Glutamate synthase [NADH],
           chloroplast precursor (EC 1.4.1.14) (NADH- GOGAT)
           {Medicago sativa}
          Length = 2208

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 78  EAVMRFSLKGGAAVVTIIETLELISQGGWRIYVVDV 185
           E   R SLKG    +  +E ++ ++  GWR  V+D+
Sbjct: 681 EQCHRLSLKGPLLKIEEMEAIKKMNYRGWRTKVLDI 716


>At1g30400.1 68414.m03716 glutathione S-conjugate ABC transporter
           (MRP1) identical to glutathione S-conjugate transporting
           ATPase (AtMRP1) [Arabidopsis thaliana] GI:2340166
          Length = 1622

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +3

Query: 48  GTTXPAYFCREAVMRFSLKGGAAVVTIIETLELISQGGWRIYVVDVYGL 194
           G   P Y     V+     G A V+T++ET   I +  W +    +Y L
Sbjct: 103 GAGFPPYEAFMLVLEAFAWGSALVMTVVETKTYIHELRWYVRFAVIYAL 151


>At5g44250.1 68418.m05413 expressed protein contains Pfam PF05705:
           Eukaryotic protein of unknown function (DUF829)
          Length = 403

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -1

Query: 137 GLNYSYNGCPTLQTETHYCFTAEIG---GXGGTHPRGLHKR 24
           GLN S+NG P + T+ H+   + +G   G  G + +  HK+
Sbjct: 304 GLNRSFNGTPLVTTD-HFFVPSTVGYYVGRDGGYVQDEHKQ 343


>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
           XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
          Length = 1020

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 218 PPGVKWLLEPIDIHDVNAPPTLRYKF*GLNYSYN 117
           PPGV +  + +DI D+  PP L ++  G    +N
Sbjct: 798 PPGVIFPKKTVDIGDLKPPPALWHEDNGRRPMHN 831


>At1g10330.1 68414.m01163 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 467

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +2

Query: 80  SSNAFQFEGWGSRCNYN*DLRTYISRWVAHLRRGCLWAPVTTSHQVGSELVHPS 241
           +SNA     W ++C YN  +R+Y++    +     L+  +  SH   + L  PS
Sbjct: 39  TSNALVASRWKTKCVYNTLIRSYLTTG-EYKTSLALFTHMLASHVQPNNLTFPS 91


>At3g23640.1 68416.m02973 glycosyl hydrolase family 31 protein
           similar to alpha-glucosidase II from SP:Q9F234 [Bacillus
           thermoamyloliquefaciens]; contains Pfam profile: PF01055
           Glycosyl hydrolases family 31
          Length = 991

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
 Frame = -1

Query: 239 MGGRAQS----PPGVKWLLEPIDIHDVNAPPTLRYKF*GLNYSYN 117
           +GGR  S    P G++WL   IDI+         Y+  G    YN
Sbjct: 774 VGGRILSMTHVPSGIQWLHSRIDINGYEEYSGTEYRSAGCTEEYN 818


>At3g22180.1 68416.m02799 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 706

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 191 APVTTSHQVGSELVHPSKQ 247
           APVTT+ +V + L++PS Q
Sbjct: 578 APVTTTSEVRNRLLNPSSQ 596


>At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family
           protein similar to A. thaliana putative protein
           F6I18.110, GenBank accession number 2980768
          Length = 310

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 74  AEIGGXGGTHPRGLHKRSYHL*IS 3
           + +GG GG+ P G H + + L +S
Sbjct: 62  SHMGGLGGSGPTGFHNQMFPLGLS 85


>At3g58050.1 68416.m06471 expressed protein
          Length = 1209

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 119 NGCPTLQTETHYC 81
           +GCP+ + E HYC
Sbjct: 634 DGCPSPRAENHYC 646


>At1g68800.1 68414.m07865 TCP family transcription factor, putative
           similar to cyc2 protein [Misopates orontium]; residues
           80 to 140 nearly identical to cyc1a protein (nuclear
           flower development gene cycloidea) GB:AAF07239
           [Antirrhinum siculum]
          Length = 317

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 246 CLDGWTSSEPTWCEVVTGAHRHPR 175
           C+DG TS E  W   V    RH +
Sbjct: 73  CVDGSTSQEVQWRRTVKKRDRHSK 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,392,967
Number of Sequences: 28952
Number of extensions: 117973
Number of successful extensions: 245
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 12,070,560
effective HSP length: 61
effective length of database: 10,304,488
effective search space used: 216394248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)