Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40047
(876 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 55 9e-08
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 54 1e-07
06_03_0052 - 16027570-16027617,16027789-16027795,16028103-160283... 32 0.52
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 32 0.69
01_07_0175 - 41715304-41716760,41717200-41717500,41718109-41718369 30 2.1
07_01_0481 - 3621798-3621926,3622572-3622660,3622780-3622933,362... 30 2.8
06_01_0611 + 4420873-4422207 30 2.8
08_01_0874 + 8575718-8576422,8576603-8576662,8576799-8576945,857... 29 4.9
05_04_0146 + 18393447-18394043 29 4.9
03_01_0380 + 2955102-2955357,2955468-2956189 29 4.9
09_06_0371 + 22615809-22617431,22618312-22618422,22619361-226194... 29 6.5
02_05_0230 + 27029725-27030871,27030995-27031113,27031225-270313... 29 6.5
06_01_0584 - 4178391-4178732,4178854-4178915,4180361-4180481,418... 28 8.5
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 28 8.5
03_02_0173 + 6138406-6138628,6139769-6139857,6139922-6140608,614... 28 8.5
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 54.8 bits (126), Expect = 9e-08
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Frame = +1
Query: 340 DSMPKGTFNMDDFKRVYSNED---EAKSIPYFWEKFDPENYSIWYAEYKYPEELAKVFMT 510
D +P +D++KR+YSN +I FW+ +DPE YS+W+ +YKY +E F+T
Sbjct: 268 DLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVT 327
Query: 511 V 513
+
Sbjct: 328 M 328
Score = 54.8 bits (126), Expect = 9e-08
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Frame = +1
Query: 340 DSMPKGTFNMDDFKRVYSNED---EAKSIPYFWEKFDPENYSIWYAEYKYPEELAKVFMT 510
D +P +D++KR+YSN +I FW+ +DPE YS+W+ +YKY +E F+T
Sbjct: 833 DLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVT 892
Query: 511 V 513
+
Sbjct: 893 M 893
Score = 39.1 bits (87), Expect = 0.005
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +3
Query: 513 NLITGMFQRLDKMRKQAFASVCLFGEDNNSTISGVWVWRGKEL 641
N + G QR+D RK AF + + G + + G+W++RG E+
Sbjct: 329 NKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEI 371
Score = 39.1 bits (87), Expect = 0.005
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +3
Query: 513 NLITGMFQRLDKMRKQAFASVCLFGEDNNSTISGVWVWRGKEL 641
N + G QR+D RK AF + + G + + G+W++RG E+
Sbjct: 894 NKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEI 936
Score = 38.7 bits (86), Expect = 0.006
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +2
Query: 2 TLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQVSAVVGSLTLCAAPPTYD 181
TLAD+++ L F ++ S S +V+R+F T+ +QP V+G + + P
Sbjct: 166 TLADIVMTCNLYMGFARIMTKSFTSEFPHVERYFWTMVNQPNFKKVLGDVKQAESVPPVQ 225
Query: 182 PK 187
K
Sbjct: 226 KK 227
Score = 37.1 bits (82), Expect = 0.018
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +2
Query: 2 TLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQVSAVVGSLTLCAAPPTYD 181
TLAD+++ L F ++ + S +V+R+F T+ +QP V+G + + P
Sbjct: 727 TLADIVMTCNLYMGFARIMTKNFTSEFPHVERYFWTMVNQPNFKKVMGDVKQADSVPQVQ 786
Query: 182 PK 187
K
Sbjct: 787 KK 788
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 54.4 bits (125), Expect = 1e-07
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Frame = +1
Query: 340 DSMPKGTFNMDDFKRVYSNED---EAKSIPYFWEKFDPENYSIWYAEYKYPEELAKVFMT 510
D +P +D++KR+YSN +I FW+ +DPE YS+W+ +YKY +E F+T
Sbjct: 285 DLLPPSKMILDEWKRLYSNTKTNFREIAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVT 344
Query: 511 V 513
+
Sbjct: 345 M 345
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +2
Query: 2 TLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQVSAVVGSLTLCAAPPTYD 181
TLAD+++ L + F +L S S +V+R+F T+ +QP V+G + P
Sbjct: 181 TLADIVMTCNLYYGFVRILIKSFTSEFPHVERYFWTMVNQPNFKKVIGDFKQAESVPPVQ 240
Query: 182 PK 187
K
Sbjct: 241 KK 242
Score = 32.3 bits (70), Expect = 0.52
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 528 MFQRLDKMRKQAFASVCLFGEDNNSTISGVWVWRGKEL 641
M +R+D RK AF + + G + G+W++RG+++
Sbjct: 345 MNKRMDLCRKYAFGKMLVIGSTPPFKVKGLWLFRGQDI 382
>06_03_0052 -
16027570-16027617,16027789-16027795,16028103-16028341,
16028432-16028566,16028670-16028888
Length = 215
Score = 32.3 bits (70), Expect = 0.52
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +1
Query: 559 RLSHPSACLVKTTIPPSPECGCGAEKNSCSRCRLI 663
R HP++ LV+ T PP P G G S SR RL+
Sbjct: 30 RAGHPTSALVRATAPPPPATGGG---GSSSRARLL 61
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 31.9 bits (69), Expect = 0.69
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1
Query: 565 SHPSACLVKTTIPPSPECGCGAEKNSC 645
SH C+ K PP P CGC +C
Sbjct: 206 SHAFVCVCKPAPPPPPPCGCSGGHGNC 232
>01_07_0175 - 41715304-41716760,41717200-41717500,41718109-41718369
Length = 672
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -3
Query: 712 ERIQVSSSRRNS*STAKSDDSGNTSSFPRHTHTPEMVELLSSPNRQTDAKACLRILSNL 536
+ I + + N S D S + R TH V+++SSP + A + ILSNL
Sbjct: 355 KNIDIKIAALNFISNLSKDASQELAEQIRDTHLNIFVKIISSPTSGNEKAAAIGILSNL 413
>07_01_0481 -
3621798-3621926,3622572-3622660,3622780-3622933,
3624104-3624111,3625522-3625547,3625757-3625881
Length = 176
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = -3
Query: 643 TSSFPRHTHTPEMVELLSSPNRQTDAKACLRILSNLWN 530
T +P T V + PN D CL IL N W+
Sbjct: 84 TEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWS 121
>06_01_0611 + 4420873-4422207
Length = 444
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = +1
Query: 73 FVADKRSAL-----VPDRRPPATSVGRRRLAHALC 162
+V D+ +AL P RRPPA S RRRLA + C
Sbjct: 279 YVMDEHAALRVAVRTPKRRPPARSRSRRRLALSEC 313
>08_01_0874 +
8575718-8576422,8576603-8576662,8576799-8576945,
8577390-8577527
Length = 349
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/41 (46%), Positives = 23/41 (56%)
Frame = -3
Query: 757 PRRSSLGKIFLVSSLERIQVSSSRRNS*STAKSDDSGNTSS 635
PRR + G+ L ER V+SSR+ S S S S NTSS
Sbjct: 97 PRRETAGQDLLDHLKER--VNSSRKRSLSGGSSPSSSNTSS 135
>05_04_0146 + 18393447-18394043
Length = 198
Score = 29.1 bits (62), Expect = 4.9
Identities = 20/76 (26%), Positives = 36/76 (47%)
Frame = +1
Query: 532 SRG*TKCANRLSHPSACLVKTTIPPSPECGCGAEKNSCSRCRLIWQWTTSSYDWKKLGSF 711
+RG TK A + +A + + E GC A +++CS + TT++ W++ G
Sbjct: 113 ARGRTKAAVAPAAAAAVVAAASAGGGREMGCRAGRSTCS----LHGTTTTTPRWRQTGGP 168
Query: 712 RARRPRKFFQDYFFVG 759
RR K + + +G
Sbjct: 169 WRRRQNKLHRGHRVLG 184
>03_01_0380 + 2955102-2955357,2955468-2956189
Length = 325
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -3
Query: 721 SSLERIQVSSSRRNS*STAKSDDSGNTSSFPRHTHTPEMVELLSSP 584
SS + + S + S SDDSG++ S HTHT V+ SSP
Sbjct: 157 SSSDNEENSLDGESDSSDESSDDSGSSES-SEHTHTAPFVQENSSP 201
>09_06_0371 +
22615809-22617431,22618312-22618422,22619361-22619453,
22619562-22619661,22619754-22619834,22620774-22621047,
22621254-22622069,22622921-22623029,22623509-22623602,
22623881-22623939,22624150-22624197
Length = 1135
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 589 KTTIPPSPECGCGAEKNSCSRCRLIWQWTTSSYDW 693
K T SP+ C ++ S S+C W TSS DW
Sbjct: 832 KMTENLSPQQQCRDKQTSISKCSCDWLDGTSSLDW 866
>02_05_0230 +
27029725-27030871,27030995-27031113,27031225-27031349,
27031491-27031590,27031680-27031757,27032818-27032901,
27033077-27033162,27033869-27034049,27034596-27034646
Length = 656
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 263 GCSSFHTSYLFCPPSCSVHQLTPGT 189
GCSS TS++F P C Q+ G+
Sbjct: 434 GCSSIATSFVFTPSECIKQQMQVGS 458
>06_01_0584 -
4178391-4178732,4178854-4178915,4180361-4180481,
4180592-4180732,4180830-4180959,4182306-4182436,
4182528-4182601,4182680-4182741,4183135-4183209,
4184658-4184760,4184835-4184991,4185549-4185743,
4186204-4186282,4186697-4186806,4187249-4187374,
4187475-4187541,4187622-4187791,4187880-4188018,
4188361-4188522,4188672-4188772,4188852-4188994,
4189438-4189537,4190364-4190414,4191062-4191169,
4191279-4191494,4191585-4191721,4191820-4191915,
4192017-4192234,4192764-4192925,4193006-4193163,
4194221-4194379
Length = 1364
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 699 TWILSSE--ETKKIFPRLLLRGNETDKKRVENFNPGQDISSGIPD 827
TW+ SE ET KI+PRL R N K+ D S+ P+
Sbjct: 105 TWVSESEYLETAKIYPRLKTRLNNFHKQMDSTDKSDDDYSAIRPE 149
>04_04_1445 -
33658355-33658417,33658536-33658669,33659056-33659116,
33659197-33659356,33660032-33660081,33662237-33662290,
33662630-33662704,33662821-33662949,33663065-33663152,
33663266-33663372,33663513-33663561,33663657-33663760,
33663941-33663980,33664409-33664659,33664674-33664686,
33665846-33666355,33666437-33667657,33667973-33668221,
33668305-33668531
Length = 1194
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 460 WYAEYKYPEELAKVFMTVTLLRVCSRG*TKCANRLSHPSACLVKTTIPPSPEC 618
W + + +E A+ + LL V R +K N + AC+V +PPS C
Sbjct: 583 WSSPFVKSQEEARTSLFALLLHVAIRLLSK--NDATFRKACMVAAKLPPSSSC 633
>03_02_0173 +
6138406-6138628,6139769-6139857,6139922-6140608,
6140682-6140834,6140922-6141290
Length = 506
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 380 SVSTPTKTK-LNLFLTSGRSLTPRTIPFGMPNTNTLRNSLRC 502
S+ P + K L + + S +PF MPN TL S RC
Sbjct: 291 SIGEPLQMKNLQVIFPNSISFGRAELPFSMPNLETLNISSRC 332
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,327,195
Number of Sequences: 37544
Number of extensions: 572860
Number of successful extensions: 1870
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1869
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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