Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40045
         (882 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71186-6|CAI79167.1|  183|Caenorhabditis elegans Hypothetical pr...    30   2.5  
Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger p...    29   4.4  
Z69902-2|CAA93764.1|  326|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z71186-6|CAI79167.1|  183|Caenorhabditis elegans Hypothetical
           protein F23D12.8 protein.
          Length = 183

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = -1

Query: 825 LRVKKFFWIHQDLGHSEIPLIRFKSFNSPVVSNFFLISYMVIFSNDKLPNIPHF 664
           +R KK +W      H ++ L+  KSF +  +++F   SYM +F++ +  NI  F
Sbjct: 31  MRKKKTYWDK----HPDLKLL--KSFGTRRLTSFMFFSYMFLFASAEYTNILQF 78


>Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical
           protein F58E6.1b protein.
          Length = 764

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = -3

Query: 514 HFC*KNCFFFSYLIVR*RKYFFINEKQLIRYKKNSFIVSMDGVRMDN*YETFTILSCALN 335
           +F  K  F     + R RK    N K + +Y KN+  +S   +   N   TFT ++   N
Sbjct: 620 YFSFKYTFMNRTALNRRRKNLANNPKNIFKYSKNNINLSYSNIVASNILRTFTFINSKSN 679


>Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical
           protein F58E6.1a protein.
          Length = 966

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = -3

Query: 514 HFC*KNCFFFSYLIVR*RKYFFINEKQLIRYKKNSFIVSMDGVRMDN*YETFTILSCALN 335
           +F  K  F     + R RK    N K + +Y KN+  +S   +   N   TFT ++   N
Sbjct: 620 YFSFKYTFMNRTALNRRRKNLANNPKNIFKYSKNNINLSYSNIVASNILRTFTFINSKSN 679


>AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger
           protein STAT-B protein.
          Length = 810

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = -3

Query: 514 HFC*KNCFFFSYLIVR*RKYFFINEKQLIRYKKNSFIVSMDGVRMDN*YETFTILSCALN 335
           +F  K  F     + R RK    N K + +Y KN+  +S   +   N   TFT ++   N
Sbjct: 666 YFSFKYTFMNRTALNRRRKNLANNPKNIFKYSKNNINLSYSNIVASNILRTFTFINSKSN 725


>Z69902-2|CAA93764.1|  326|Caenorhabditis elegans Hypothetical
           protein C47D12.3 protein.
          Length = 326

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = -1

Query: 798 HQDLGHSEIPLIRFKSFNSPVVSNFFLISYMVIFSNDKLPNIPHFHWVSLNNDVRTNY 625
           H D G     L R    ++ V  N  +   M+ F   KLP++  FHWV+ + +   NY
Sbjct: 83  HPDTGEKMFILGRM---SAQVPCNMLITGGMLTFYQ-KLPHVIFFHWVNQSFNAIVNY 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,856,127
Number of Sequences: 27780
Number of extensions: 279720
Number of successful extensions: 577
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)