Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40042
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    28   2.1  
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    28   2.1  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   2.7  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    27   2.7  
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    27   3.6  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   3.6  
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    26   8.4  

>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +2

Query: 338 EQYYQRALEIYESKLGPDDPNVAKTKNNLASCYLKQGKYKEAETLYKQV 484
           E+ +QRA+     K G DDP    TK N       +G  K    +YK V
Sbjct: 399 EENFQRAMSALMEKQG-DDPAAMATKGNAKKGKTGKGGVKGPSDIYKIV 446


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 514 TIDGDNKPIWQVAEEREENKHLQKENAPYGDYGGWHNAAKVDSPT 648
           T+  D+ P+W +  +   N  L+++N    DY        VD PT
Sbjct: 110 TLTSDH-PLWSILPDEVRNSLLERKNVMAFDYEQVKKFVSVDQPT 153


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 341 QYYQRALEIYESKLGPDDPNVAKTKNNLASCYLKQGKYKEAETLYKQVL 487
           + +  A+E Y++ L  D P   +  + L  CYL Q     A + Y+Q L
Sbjct: 382 EQFPLAIEYYQTILDCD-PKQGEIWSALGHCYLMQDDLSRAYSAYRQAL 429



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 356 ALEIYESKLGPDDPNVAKTKNNLASCYLKQGKYKEAETLYKQVLTR 493
           A++     L  DD + A++   +  CY+ Q KY +A   Y+Q + R
Sbjct: 569 AIQYLTKSLEADDTD-AQSWYLIGRCYVAQQKYNKAYEAYQQAVYR 613


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
 Frame = +2

Query: 335 VEQYYQRALEIYESKLGPDDPN-VAKTKNNLASCYLKQGKYKEAETLYKQ--VLTRAHER 505
           VEQ +     +Y     PD    V+ + +N    +  Q     A ++YK+  +  +    
Sbjct: 451 VEQLHGHEESVYSVAFSPDGKYLVSGSLDNTIKLWELQCVSNVAPSMYKEGGICKQTFTG 510

Query: 506 ESE-PLTVTISPSGKWL 553
             +  L+VT+SP GKW+
Sbjct: 511 HKDFILSVTVSPDGKWI 527


>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +3

Query: 27  ATMLNILALVYRDQNKYKEAANLLNDALSIREKTLGEN 140
           +T+ +++ L+ RD  K K A  ++  ALSI +K  GEN
Sbjct: 124 STVQHLVNLIMRDGKKAK-AEKIVATALSIIQKETGEN 160


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
 Frame = +1

Query: 511 GTIDGDNKPIWQVAE-EREENKHLQKENAPYGDYGG-WHNAAKVDSPTVTTTLKNWGALY 684
           G  DG N PIW + + ER+ +     +++  GD    W N + + +     T +   A+Y
Sbjct: 412 GGYDGQNIPIWPLLQPERKLDVVFAFDSS--GDTSNFWPNGSSLVATYERVTQRASDAVY 469

Query: 685 RRQGQITMP-PIRFEGLGLSA 744
             +  + +P P  F  LGL+A
Sbjct: 470 DVEDFVHVPTPETFVNLGLNA 490


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -3

Query: 738 KAQSFEPYRRHRNLPLAPVQRAPVLQRRGHCRRVHLGGI 622
           K + + PY R   L   P+ ++  +QR G   R   G +
Sbjct: 324 KQRIYNPYTRTSKLINVPISKSSAIQRSGRAGRTMRGKV 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,974,435
Number of Sequences: 5004
Number of extensions: 54958
Number of successful extensions: 194
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)