Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40041
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.16 |iws1||transcription elongation factor complex subun...    27   3.6  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.6  
SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|ch...    27   3.6  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    27   4.7  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   8.2  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    26   8.2  

>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +3

Query: 282 TIAASSETSGVYTMTSSELTTRLKIDAMSEDSRTDYDESHYDCYKQAKENDLAEFDSISS 461
           TI    + + V T    +L  + +    SED  +D DE+ ++ + ++K    AE  +I +
Sbjct: 26  TIDTKVDVADVTTHVDEDLDNKEEALDFSEDELSDLDENQFENFDESKIGREAEEPTIYN 85

Query: 462 I--LKNKAE 482
           +   K K E
Sbjct: 86  LPTFKKKQE 94


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +3

Query: 258 YDGLGQPATIAASSETSGVYTMTSSELTT 344
           +D  G  +T+AAS+ + G+Y+ TS+  T+
Sbjct: 115 FDFEGSDSTLAASTISGGIYSSTSASSTS 143


>SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 442

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 690 SDLIVGXGXFILKNHPVEXPXWDSDSDYVKVSFXP 794
           +D++VG G  + +    + P W+    Y  V F P
Sbjct: 406 ADVVVGLGKGVYEEIAKDNPHWERTGKYAVVEFCP 440


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = +3

Query: 252 SLYDGLGQPATIAASSETSGVYTMTSSELTTRLKIDAMSEDSRTDYDE 395
           S Y G G+P   + + E+S      +++ +++ ++   S D+  DY+E
Sbjct: 117 SKYLGNGKPIEASQTEESSSTPPSPATKKSSKQRLTMNSRDAALDYEE 164


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -1

Query: 524  SELGTLTIRYVIQCFCFIFKNRRNAVKLCKIIL 426
            ++ GT T+  ++ C C +F    +  +L KI++
Sbjct: 1092 TKAGTATLMEIVPCLCSLFTRLNDYERLKKIVV 1124


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 540 IEVCQSGITIKKTLYFLEDEQTPT 611
           +E  QSGI I+KT+  L +++ P+
Sbjct: 299 VENVQSGIDIEKTIQLLNNQEIPS 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,666
Number of Sequences: 5004
Number of extensions: 50492
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)