Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40041
         (887 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0069 + 536787-537068,537193-537493,537528-537581,538848-53...    36   0.057
08_02_1082 + 24225592-24226422                                         29   4.9  
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33...    29   6.5  
11_06_0657 + 25938382-25938443,25938511-25938718,25939222-259392...    28   8.6  

>01_01_0069 +
           536787-537068,537193-537493,537528-537581,538848-539241,
           539345-539595,539678-539798,539893-540133,540341-540445,
           540571-540615,540738-540890,541132-541410,541705-541841,
           541975-542017,542228-542329
          Length = 835

 Score = 35.5 bits (78), Expect = 0.057
 Identities = 19/46 (41%), Positives = 25/46 (54%)
 Frame = +3

Query: 270 GQPATIAASSETSGVYTMTSSELTTRLKIDAMSEDSRTDYDESHYD 407
           G   +I++SS TSG  TM S +L  R   D ++ED  T Y  S  D
Sbjct: 180 GDDPSISSSSATSGAVTMVSGKLVVREDGDELAEDESTRYVTSATD 225


>08_02_1082 + 24225592-24226422
          Length = 276

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 261 DGLGQPATIAASSETSGVYTMTSSELTTRLKIDAMSEDSRTD 386
           +   +  T  +++ T+     T+SE+TT L + A+ EDS TD
Sbjct: 171 EATSEKKTTTSTTTTTPPAPDTTSEITTELVVPAVEEDSFTD 212


>01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-336498,
            336577-336734,337180-337310,337385-337472,337587-337690,
            338346-338444,339060-339116,339262-339337,339519-339602,
            339969-340010,340128-340198,341516-341564,342370-342441,
            343149-343286,343393-343473,344166-344353,344591-345188,
            345274-345342,346729-346854,347048-347175,347986-348142,
            348342-348388,348472-348535,348691-348765,349292-349414,
            349797-349982,351179-351303,351390-351459,351974-352101,
            352585-352726,353065-353163,353239-353285,353598-353652,
            353758-353967,354686-354757,354836-354905,355231-355414,
            355521-355644,355732-355863,356252-356317,356805-356852,
            357572-357676,357728-357865,358097-358399,358482-358594,
            359082-359148,359236-359310,359395-359517,359610-359618,
            360156-360320,360401-360502,361545-361696,361794-361995,
            362079-362126,362215-362298,362613-362657,363302-363385,
            363890-363970,364044-364133,364217-364279,364824-364841,
            365238-365378,365494-365550,366091-366185,366275-366383,
            367067-367156,367308-367387,367480-367558,367742-367903,
            368005-368136,368335-368469,368553-368618,369317-369457,
            369575-369648,369685-369910
          Length = 2905

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 672  LTASGLSDLIVGXGXFILKNHP 737
            L A G  D+ +  G +ILKNHP
Sbjct: 2095 LRAQGQHDMAINLGKYILKNHP 2116


>11_06_0657 +
           25938382-25938443,25938511-25938718,25939222-25939268,
           25939473-25939805,25940529-25940613,25940689-25940884,
           25941012-25941182,25941261-25941318,25941429-25941657,
           25942296-25943183
          Length = 758

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 324 TSSELTTRLKIDAMSEDSRTDYDESHY-DCYKQAKE 428
           T  E    L+ D + +DSR+D+ E+++ D Y   K+
Sbjct: 405 TMEEFLASLEKDLLQDDSRSDFTETYWGDAYNAVKQ 440


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,988,419
Number of Sequences: 37544
Number of extensions: 298642
Number of successful extensions: 601
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)