Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40041
         (887 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24398| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)                   29   5.0  

>SB_24398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 500

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 411 YKQAKENDLAEFDSISSILKNKAETLNHVTNS 506
           YK+ +END+ ++   S  ++  A TL HVT S
Sbjct: 81  YKEPEENDVIDYILDSEAVQKVAMTLGHVTTS 112


>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
          Length = 705

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +3

Query: 258 YDGLGQPATIAASSETSGVYTMTSSELTTR 347
           Y G+G P T  AS  T+GV T T +  TTR
Sbjct: 296 YQGVGAPKT-TASPTTAGVVTTTGAPSTTR 324


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,202,108
Number of Sequences: 59808
Number of extensions: 359807
Number of successful extensions: 681
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)