Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40041
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   4.9  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   4.9  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   4.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.5  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 336 LTTRLKIDAMSEDSRTDYDESHY 404
           +TT L +  +S DSRTD  +  Y
Sbjct: 281 ITTVLTLSTISLDSRTDLPKVRY 303


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 372 DSRTDYDESHYDCYKQAKENDLAEFDSISSILKNKAETLNHVTN 503
           D   D+DE+     K++  +++   D     LKNK ET +  T+
Sbjct: 419 DDNEDHDENMIIPPKKSDMSNMQSDDGGPLSLKNKVETTHSGTS 462


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 533 STQSELGTLTIRYVIQCFCFIFKNRRNAVKLCKI 432
           S  +EL TL  +    CF   FKN++  V L +I
Sbjct: 529 SVLTELRTLGNQNSEMCFSLKFKNKKLPVFLAEI 562


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 390 DESHYDCYKQAKEND 434
           D  HYD YK+ + N+
Sbjct: 172 DSRHYDRYKEEESNE 186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,470
Number of Sequences: 438
Number of extensions: 3598
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)