Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40041
         (887 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32460.1 68415.m03965 myb family transcription factor (MYB101...    29   3.1  
At2g42480.1 68415.m05255 meprin and TRAF homology domain-contain...    29   4.1  

>At2g32460.1 68415.m03965 myb family transcription factor (MYB101)
           identical to putative transcription factor MYB101
           GI:18087348 from [Arabidopsis thaliana]
          Length = 490

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 560 DHDKENIILFRGRTNSNVSASSFHGDGSDPN 652
           DH+ +N+I +   +N++ S+SSF    S P+
Sbjct: 159 DHNHQNMIQYTNSSNTSSSSSSFSSSSSQPS 189


>At2g42480.1 68415.m05255 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 743

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 363 MSEDSRTDYDESHYDCYKQAKENDLAEFDSISSILKNKAETLN 491
           +++D   DYDE   D  ++ K  +  EFDS    LK+K + ++
Sbjct: 248 IADDDDDDYDEWEQDIEERLKNLEGMEFDSKLDSLKSKLDEIS 290


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,829,939
Number of Sequences: 28952
Number of extensions: 254490
Number of successful extensions: 565
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)