Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40040
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0102 - 41093042-41093231,41093385-41093473,41093730-410939...    31   1.2  
07_03_1621 + 28187846-28187915,28189214-28189293,28189485-281895...    31   1.6  
05_04_0086 - 17797792-17797810,17798049-17798234,17798319-177984...    29   3.7  
12_01_0971 - 9781887-9781924,9782036-9782247,9782327-9784114,978...    29   6.5  
01_01_0516 + 3778891-3779069,3779436-3779541,3780526-3780888           28   8.5  

>01_07_0102 -
           41093042-41093231,41093385-41093473,41093730-41093924,
           41095173-41095334,41095412-41095484,41095691-41095758,
           41095847-41095894,41096012-41096101,41096204-41096286,
           41097000-41097066
          Length = 354

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 790 YNHQISPSLPPLKNFNPRATHNLLPSPIW 876
           + H I P LPP  +F P+ T++  P  +W
Sbjct: 236 HGHDIVPHLPPYFSFFPQKTYHHFPREVW 264


>07_03_1621 +
           28187846-28187915,28189214-28189293,28189485-28189550,
           28189801-28189848,28189967-28190034,28190107-28190179,
           28190284-28190445,28190620-28190814,28191114-28191190,
           28191280-28191481
          Length = 346

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 790 YNHQISPSLPPLKNFNPRATHNLLPSPIW 876
           + H I P LPP  +F P  T++  P  +W
Sbjct: 228 HGHDIVPHLPPYFSFLPHLTYHHFPREVW 256


>05_04_0086 -
           17797792-17797810,17798049-17798234,17798319-17798407,
           17798518-17798712,17799364-17799525,17799609-17799681,
           17799929-17799996,17800086-17800133,17800223-17800288,
           17800418-17800488,17800825-17800891
          Length = 347

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 796 HQISPSLPPLKNFNPRATHNLLPSPIW 876
           H I P LPP  ++ P+ T++  P  +W
Sbjct: 226 HDIVPHLPPYYHYFPQKTYHHFPREVW 252


>12_01_0971 -
           9781887-9781924,9782036-9782247,9782327-9784114,
           9784630-9785432
          Length = 946

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 141 SINKRPTLLYKINLKQTKGIRPTGDTSKGKQNAFSYLSTF 22
           SI++ P +  KI +   KG+   GD S+ +QN  S+L  F
Sbjct: 225 SISRTPNIR-KILVDMLKGLGSNGDVSEDEQNLISHLRGF 263


>01_01_0516 + 3778891-3779069,3779436-3779541,3780526-3780888
          Length = 215

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 766 NYGWNLNLYNHQISPSLPPLKNFNPRATH 852
           NYG  ++L   +   S+PP K  NP+  H
Sbjct: 63  NYGIGIHLLQAEDPESMPPNKEINPKDNH 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,192,037
Number of Sequences: 37544
Number of extensions: 380337
Number of successful extensions: 648
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)