Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40040
         (876 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)                 30   2.1  
SB_26977| Best HMM Match : WD40 (HMM E-Value=1.9e-10)                  28   8.6  

>SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)
          Length = 747

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 44  AFCFPFDVSPVGRIPFVCFKFILYNNVGLLFI 139
           A C PFDVS  G I +V F   L N     F+
Sbjct: 440 AICLPFDVSTTGSIAYVAFLLFL-NGAAFAFV 470


>SB_26977| Best HMM Match : WD40 (HMM E-Value=1.9e-10)
          Length = 345

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +1

Query: 496 SNRILYRVSISDIESIYFLN 555
           S++ILYR++I  ++  YFLN
Sbjct: 178 SHKILYRINIDGLQHFYFLN 197


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,056,416
Number of Sequences: 59808
Number of extensions: 475020
Number of successful extensions: 854
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)