Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40040
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.8  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   3.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   3.7  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   4.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   8.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   8.5  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = -1

Query: 624 LYQRIVSNLKYHESRKLASFNI*IQKIYRFNIRY*YSI*DTIRYAAKPILPTPTSYALTI 445
           +Y+  + N+KY  S  L+S+N  +    +F++ Y + I +      +P+   PT   L  
Sbjct: 675 MYKLDLKNMKYTRSADLSSYNC-VPINVQFSVLYGFVIIE----CQEPVTNRPTGQLLLD 729

Query: 444 Y 442
           Y
Sbjct: 730 Y 730


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 790 YNHQISPSLPPLKNFNP 840
           Y HQ +P  P L  +NP
Sbjct: 183 YLHQFAPEQPDLNYYNP 199


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 790 YNHQISPSLPPLKNFNP 840
           Y HQ +P  P L  +NP
Sbjct: 183 YLHQFAPEQPDLNYYNP 199


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/29 (24%), Positives = 15/29 (51%)
 Frame = +1

Query: 775 WNLNLYNHQISPSLPPLKNFNPRATHNLL 861
           W+L +   ++    PP    +P  T+N++
Sbjct: 549 WSLGVLMFELLTGTPPFTGGDPMKTYNII 577


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -2

Query: 728 EFDYCGPSSYFKSYYKWILETQPYNVDLNLY 636
           E+D  G +  F   Y    E  PY VD  +Y
Sbjct: 541 EYDAAGRTYLFDLDYNESEEQCPYTVDAAIY 571


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 784 LNSIHNWFQ 758
           LN I+NWFQ
Sbjct: 527 LNEIYNWFQ 535


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,459
Number of Sequences: 438
Number of extensions: 5488
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)