Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40040
         (876 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27460.1 68415.m03319 sec23/sec24 transport family protein we...    30   1.8  
At5g18640.1 68418.m02213 lipase class 3 family protein low simil...    28   9.4  

>At2g27460.1 68415.m03319 sec23/sec24 transport family protein weak
           similarity to SP|P53992 Protein transport protein Sec24C
           (SEC24-related protein C) {Homo sapiens}; contains Pfam
           domains PF04811: Sec23/Sec24 trunk domain, PF04815:
           Sec23/Sec24 helical domain and PF04810: Sec23/Sec24 zinc
           finger
          Length = 745

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 222 IFYIQAYMTYIGIYLKLADP-VDFVVPQSINKRPTLLYKINLKQTKGIRP 76
           IF++ AY T I  Y   ADP + F  PQ    R T+     +KQ + I P
Sbjct: 647 IFFLDAYTTLIVFYSSTADPSIPFPPPQDCLLRQTI---NKVKQERSITP 693


>At5g18640.1 68418.m02213 lipase class 3 family protein low
           similarity to Triacylglycerol Acylhydrolase
           (E.C.3.1.1.3) [Rhizomucor miehei] GI:230348; contains
           Pfam profile PF01764: Lipase
          Length = 369

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 787 LYNHQISPSLPPLKNFNPRATHNLLPSPIW 876
           +++  I P LPP  +  P+ T++  P+ +W
Sbjct: 240 IHDRDIVPHLPPYYHLFPQKTYHHFPTEVW 269


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,346,235
Number of Sequences: 28952
Number of extensions: 346385
Number of successful extensions: 725
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)