Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40039
(881 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 142 4e-35
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 62 1e-10
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 58 2e-09
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 28 2.0
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ... 27 2.7
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 27 3.5
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|... 27 4.7
SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3... 26 6.2
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 26 6.2
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 8.2
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce... 26 8.2
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 142 bits (345), Expect = 4e-35
Identities = 62/84 (73%), Positives = 75/84 (89%)
Frame = +2
Query: 2 DAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVC 181
DA NMM A DPRHGRYLTVAA+FRG++SMKEVDEQ+ ++Q KNS+YFVEWIP+NV AVC
Sbjct: 295 DANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVC 354
Query: 182 DIPPRGLKMAATFIGNSTAIQELF 253
+PP+ LKM+ATFIGNST+IQE+F
Sbjct: 355 SVPPKDLKMSATFIGNSTSIQEIF 378
Score = 97.9 bits (233), Expect = 2e-21
Identities = 42/47 (89%), Positives = 46/47 (97%)
Frame = +1
Query: 253 QRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 393
+R+ +QF+AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 379 RRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 62.1 bits (144), Expect = 1e-10
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Frame = +2
Query: 11 NMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIP 190
N M CDPR GRY+ ++RG + ++V + I+ K + FV+W P K +CD P
Sbjct: 300 NQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRP 359
Query: 191 PRGLK--------MAATFIGNSTAIQELFS 256
P+ ++ A + N+T+I E +S
Sbjct: 360 PQHIEGSEIAKVDRAVCMLSNTTSIAEAWS 389
Score = 52.8 bits (121), Expect = 6e-08
Identities = 20/48 (41%), Positives = 33/48 (68%)
Frame = +1
Query: 247 AVQRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 390
A R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 387 AWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 58.0 bits (134), Expect = 2e-09
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Frame = +2
Query: 11 NMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIP 190
N M CDPR GRY+ ++RG + ++V + +I+++ + FV+W P K +C P
Sbjct: 304 NQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEP 363
Query: 191 PR--------GLKMAATFIGNSTAIQELFS 256
P+ + A + N+T+I E +S
Sbjct: 364 PQHVPGSGIAKVNRAVCMLSNTTSIAEAWS 393
Score = 52.8 bits (121), Expect = 6e-08
Identities = 20/48 (41%), Positives = 33/48 (68%)
Frame = +1
Query: 247 AVQRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 390
A R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 391 AWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 438
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +2
Query: 65 IFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIG--NSTA 238
++ + ++ + + ++NI+ N S W+PN + +P G K++ I N +
Sbjct: 343 VYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVSEMLISMLNICS 402
Query: 239 IQELFSAS-RNSSP 277
+EL+ + S+P
Sbjct: 403 KEELYETDLKESAP 416
>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 425
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = -3
Query: 831 KIKMGTGARVEISVGKVSNFESAIWFSVAHIM*IKSVYFRSAFTNFRSKLSTSLV 667
K G G + K N E+ F +H+ +S F+ F+N+ + +T L+
Sbjct: 349 KFDFGNGKSIVHEFSKDDNIETLRAFVASHLSPEESTSFQLTFSNYEALPTTGLI 403
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1
Query: 830 KLKWAQVPALKSALVRYRILNPPFG 756
KL AQ+ LKS +V Y LN P G
Sbjct: 429 KLNHAQLAMLKSQIVAYNCLNSPNG 453
>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 684
Score = 26.6 bits (56), Expect = 4.7
Identities = 20/74 (27%), Positives = 30/74 (40%)
Frame = +1
Query: 157 QQREDRRVRHSPSWSQDGRHLHRKLHRHPGAVQRISEQFTAMFRRKAFLHWYTGEGMDEM 336
Q+ RR R W+ G + H P +QF A RR+ +L + +
Sbjct: 287 QEISKRRGRFGNWWANSGLKAYFDAHGIPAYQPSPIDQFYAHLRRQYYLKTNGYQALKSK 346
Query: 337 EFTEAESNMNDLVS 378
+ EA SN+ D S
Sbjct: 347 AYEEA-SNVADSAS 359
>SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Frame = +1
Query: 730 YLHNMCNRKP--NGGFKIRYLTNADFNAGTCAHFNFCCTECIKFW 858
YLH N NG KI Y+T A N F F + + FW
Sbjct: 241 YLHKFFNPHDTKNGSLKIGYMTGAKLNHDHKTQF-FYVDQSLVFW 284
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = -3
Query: 150 HSTKYEEFLFWMLSICSSTSFMDMRPRKMAATV 52
+ST +E+ + W++++ SST MRP + ATV
Sbjct: 199 NSTVFEDIMSWVVAMSSST----MRPIRHTATV 227
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 603 KLPVMTNYLNEHNLFNTFL 659
K+ ++L EHN+FNTFL
Sbjct: 577 KITDCLSFLLEHNIFNTFL 595
>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 44 RYLTVAAIFRGRMSMKEVDEQMLNIQNKN--SSYFVEWIPNNVK 169
RYLT + + +++K V + +LN N++ + F+ W P K
Sbjct: 297 RYLTGKVVEQEYLTVKLVSKTLLNFSNQSLCKAVFIVWDPPGSK 340
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,278,333
Number of Sequences: 5004
Number of extensions: 62511
Number of successful extensions: 180
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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