Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40039
(881 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47198| Best HMM Match : Tubulin (HMM E-Value=0) 178 6e-45
SB_17879| Best HMM Match : Tubulin (HMM E-Value=0) 178 6e-45
SB_39308| Best HMM Match : Tubulin (HMM E-Value=0) 174 9e-44
SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0) 116 3e-26
SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34) 102 4e-22
SB_17651| Best HMM Match : Tubulin_C (HMM E-Value=4.7e-28) 102 4e-22
SB_25311| Best HMM Match : Tubulin (HMM E-Value=0) 76 3e-14
SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 5e-09
SB_2003| Best HMM Match : Tubulin (HMM E-Value=0) 58 7e-09
SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 9e-09
SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 1e-08
SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 1e-08
SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 1e-08
SB_19437| Best HMM Match : Tubulin (HMM E-Value=0) 58 1e-08
SB_2674| Best HMM Match : Tubulin (HMM E-Value=0) 58 1e-08
SB_51156| Best HMM Match : Tubulin_C (HMM E-Value=0) 58 1e-08
SB_23895| Best HMM Match : Tubulin_C (HMM E-Value=0) 58 1e-08
SB_34400| Best HMM Match : Tubulin (HMM E-Value=0) 57 2e-08
SB_51150| Best HMM Match : Tubulin_C (HMM E-Value=0) 54 1e-07
SB_5512| Best HMM Match : Tubulin (HMM E-Value=0) 54 2e-07
SB_47795| Best HMM Match : Tubulin_C (HMM E-Value=0.24) 53 3e-07
SB_48961| Best HMM Match : Tubulin (HMM E-Value=0) 53 4e-07
SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 4e-07
SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32) 49 6e-06
SB_57880| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.002
SB_25841| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.40
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 31 1.2
SB_30009| Best HMM Match : RVT_1 (HMM E-Value=1.2e-18) 29 3.8
SB_47142| Best HMM Match : Tubulin (HMM E-Value=5.32493e-44) 29 5.0
SB_56133| Best HMM Match : FecCD (HMM E-Value=0) 29 6.6
>SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 178 bits (433), Expect = 6e-45
Identities = 81/84 (96%), Positives = 84/84 (100%)
Frame = +2
Query: 2 DAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVC 181
DAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLN+QNKNSSYFVEWIPNNVKTAVC
Sbjct: 295 DAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVC 354
Query: 182 DIPPRGLKMAATFIGNSTAIQELF 253
DIPPRGLKM+ATFIGNSTAIQELF
Sbjct: 355 DIPPRGLKMSATFIGNSTAIQELF 378
Score = 103 bits (246), Expect = 3e-22
Identities = 46/47 (97%), Positives = 47/47 (100%)
Frame = +1
Query: 253 QRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 393
+RISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 379 KRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425
>SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 178 bits (433), Expect = 6e-45
Identities = 81/84 (96%), Positives = 84/84 (100%)
Frame = +2
Query: 2 DAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVC 181
DAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLN+QNKNSSYFVEWIPNNVKTAVC
Sbjct: 295 DAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVC 354
Query: 182 DIPPRGLKMAATFIGNSTAIQELF 253
DIPPRGLKM+ATFIGNSTAIQELF
Sbjct: 355 DIPPRGLKMSATFIGNSTAIQELF 378
Score = 103 bits (246), Expect = 3e-22
Identities = 46/47 (97%), Positives = 47/47 (100%)
Frame = +1
Query: 253 QRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 393
+RISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 379 KRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425
>SB_39308| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 391
Score = 174 bits (423), Expect = 9e-44
Identities = 79/84 (94%), Positives = 83/84 (98%)
Frame = +2
Query: 2 DAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVC 181
DAKNMMAACDP HGRYLTVAA+FRGRMSMKE+DEQMLN+QNKNSSYFVEWIPNNVKTAVC
Sbjct: 240 DAKNMMAACDPLHGRYLTVAAMFRGRMSMKELDEQMLNVQNKNSSYFVEWIPNNVKTAVC 299
Query: 182 DIPPRGLKMAATFIGNSTAIQELF 253
DIPPRGLKM+ATFIGNSTAIQELF
Sbjct: 300 DIPPRGLKMSATFIGNSTAIQELF 323
Score = 103 bits (246), Expect = 3e-22
Identities = 46/47 (97%), Positives = 47/47 (100%)
Frame = +1
Query: 253 QRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 393
+RISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 324 KRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 370
>SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 375
Score = 116 bits (279), Expect = 3e-26
Identities = 51/88 (57%), Positives = 69/88 (78%)
Frame = +2
Query: 2 DAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVC 181
D KN++ AC+P+ G+YLT AA++RG MSMKEV++QM Q++ SS FV+WIPNN K AVC
Sbjct: 200 DNKNLLIACNPKRGKYLTYAAMYRGLMSMKEVEDQMAFAQDRYSSLFVDWIPNNGKVAVC 259
Query: 182 DIPPRGLKMAATFIGNSTAIQELFSASR 265
D+PP +KM+A+ I ++TAIQELF R
Sbjct: 260 DVPPHDMKMSASCISSNTAIQELFKRIR 287
Score = 62.9 bits (146), Expect = 3e-10
Identities = 26/46 (56%), Positives = 35/46 (76%)
Frame = +1
Query: 253 QRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 390
+RI + MFRR+AFLHWYT EGMD +F EA++++ DL+S YQQ
Sbjct: 284 KRIRLHYKLMFRRRAFLHWYTEEGMDSQQFEEADNDILDLISTYQQ 329
>SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)
Length = 747
Score = 102 bits (244), Expect = 4e-22
Identities = 45/53 (84%), Positives = 49/53 (92%)
Frame = +2
Query: 95 VDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELF 253
VDEQMLN QNKNS +FVEWIPNNVKT VCDI P+GLKMAATF+GN+TAIQELF
Sbjct: 91 VDEQMLNTQNKNSPFFVEWIPNNVKTTVCDIAPKGLKMAATFVGNNTAIQELF 143
Score = 97.5 bits (232), Expect = 1e-20
Identities = 41/47 (87%), Positives = 46/47 (97%)
Frame = +1
Query: 253 QRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 393
+R+ EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM+DL++EYQQY
Sbjct: 144 KRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMHDLIAEYQQY 190
>SB_17651| Best HMM Match : Tubulin_C (HMM E-Value=4.7e-28)
Length = 271
Score = 102 bits (244), Expect = 4e-22
Identities = 45/53 (84%), Positives = 49/53 (92%)
Frame = +2
Query: 95 VDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELF 253
VDEQMLN QNKNS +FVEWIPNNVKT VCDI P+GLKMAATF+GN+TAIQELF
Sbjct: 153 VDEQMLNTQNKNSPFFVEWIPNNVKTTVCDIAPKGLKMAATFVGNNTAIQELF 205
Score = 97.5 bits (232), Expect = 1e-20
Identities = 41/47 (87%), Positives = 46/47 (97%)
Frame = +1
Query: 253 QRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 393
+R+ EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM+DL++EYQQY
Sbjct: 206 KRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMHDLIAEYQQY 252
Score = 64.5 bits (150), Expect = 1e-10
Identities = 27/31 (87%), Positives = 30/31 (96%)
Frame = +2
Query: 2 DAKNMMAACDPRHGRYLTVAAIFRGRMSMKE 94
DA+NMM ACDPRHGRYLTVAAIFRG+MSM+E
Sbjct: 39 DARNMMTACDPRHGRYLTVAAIFRGKMSMRE 69
>SB_25311| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 629
Score = 76.2 bits (179), Expect = 3e-14
Identities = 34/45 (75%), Positives = 39/45 (86%)
Frame = +2
Query: 119 QNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELF 253
Q+ +SS FVEWIPNN+KTAVCD+PP GLK AATF+ NSTAIQE F
Sbjct: 153 QDSHSSSFVEWIPNNMKTAVCDVPPVGLKNAATFLYNSTAIQEAF 197
Score = 62.5 bits (145), Expect(2) = 7e-14
Identities = 26/38 (68%), Positives = 31/38 (81%)
Frame = +1
Query: 247 AVQRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 360
A +R +EQF AMFRR+AFLHWYT EGMD +EFTE + N
Sbjct: 196 AFRRFTEQFAAMFRRRAFLHWYTTEGMDPLEFTEIKRN 233
Score = 32.7 bits (71), Expect(2) = 7e-14
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +1
Query: 340 FTEAESNMNDLVSEYQQY 393
+ A+SN+NDL+SEYQQY
Sbjct: 256 YFSADSNLNDLISEYQQY 273
>SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 58.8 bits (136), Expect = 5e-09
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Frame = +2
Query: 11 NMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIP 190
N M CDPRHG+Y+ +FRG + K+V+ + I+ K + FV+W P K + P
Sbjct: 285 NQMVKCDPRHGKYMACCLLFRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 344
Query: 191 P--------RGLKMAATFIGNSTAIQELFS 256
P ++ A + N+TAI E ++
Sbjct: 345 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 374
Score = 58.8 bits (136), Expect = 5e-09
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Frame = +2
Query: 11 NMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIP 190
N M CDPRHG+Y+ +FRG + K+V+ + I+ K + FV+W P K + P
Sbjct: 716 NQMVKCDPRHGKYMACCLLFRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 775
Query: 191 P--------RGLKMAATFIGNSTAIQELFS 256
P ++ A + N+TAI E ++
Sbjct: 776 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 805
Score = 52.8 bits (121), Expect = 4e-07
Identities = 19/45 (42%), Positives = 32/45 (71%)
Frame = +1
Query: 256 RISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 390
R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 375 RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 419
Score = 52.8 bits (121), Expect = 4e-07
Identities = 19/45 (42%), Positives = 32/45 (71%)
Frame = +1
Query: 256 RISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 390
R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 806 RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 850
>SB_2003| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 451
Score = 58.4 bits (135), Expect = 7e-09
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Frame = +2
Query: 11 NMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIP 190
N M CDPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K + P
Sbjct: 300 NQMVKCDPRHGKYMACCLLYRGDVVPKDVNSSIATIKTKRTIQFVDWCPTGFKVGINYQP 359
Query: 191 P--------RGLKMAATFIGNSTAIQELFS 256
P ++ A + N+TAI E ++
Sbjct: 360 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 389
Score = 52.8 bits (121), Expect = 4e-07
Identities = 19/45 (42%), Positives = 32/45 (71%)
Frame = +1
Query: 256 RISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 390
R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 390 RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1231
Score = 58.0 bits (134), Expect = 9e-09
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Frame = +2
Query: 11 NMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIP 190
N M CDPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K + P
Sbjct: 671 NQMVKCDPRHGKYMACCLLYRGDVVPKDVNSAIATIKTKKTIQFVDWCPTGFKVGINYQP 730
Query: 191 P--------RGLKMAATFIGNSTAIQELFS 256
P ++ A + N+TAI E ++
Sbjct: 731 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 760
Score = 52.8 bits (121), Expect = 4e-07
Identities = 19/45 (42%), Positives = 32/45 (71%)
Frame = +1
Query: 256 RISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 390
R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 761 RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 805
Score = 52.8 bits (121), Expect = 4e-07
Identities = 19/45 (42%), Positives = 32/45 (71%)
Frame = +1
Query: 256 RISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 390
R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 1170 RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 1214
>SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 57.6 bits (133), Expect = 1e-08
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Frame = +2
Query: 11 NMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIP 190
N M CDPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K + P
Sbjct: 237 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 296
Query: 191 P--------RGLKMAATFIGNSTAIQELFS 256
P ++ A + N+TAI E ++
Sbjct: 297 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 326
Score = 52.8 bits (121), Expect = 4e-07
Identities = 19/45 (42%), Positives = 32/45 (71%)
Frame = +1
Query: 256 RISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 390
R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 327 RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 371
>SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 57.6 bits (133), Expect = 1e-08
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Frame = +2
Query: 11 NMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIP 190
N M CDPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K + P
Sbjct: 300 NQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 359
Query: 191 P--------RGLKMAATFIGNSTAIQELFS 256
P ++ A + N+TAI E ++
Sbjct: 360 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 389
Score = 52.8 bits (121), Expect = 4e-07
Identities = 19/45 (42%), Positives = 32/45 (71%)
Frame = +1
Query: 256 RISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 390
R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 390 RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 57.6 bits (133), Expect = 1e-08
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Frame = +2
Query: 11 NMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIP 190
N M CDPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K + P
Sbjct: 265 NQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 324
Query: 191 P--------RGLKMAATFIGNSTAIQELFS 256
P ++ A + N+TAI E ++
Sbjct: 325 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 354
Score = 52.8 bits (121), Expect = 4e-07
Identities = 19/45 (42%), Positives = 32/45 (71%)
Frame = +1
Query: 256 RISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 390
R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 355 RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 399
>SB_19437| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 885
Score = 57.6 bits (133), Expect = 1e-08
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Frame = +2
Query: 11 NMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIP 190
N M CDPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K + P
Sbjct: 733 NQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 792
Query: 191 P--------RGLKMAATFIGNSTAIQELFS 256
P ++ A + N+TAI E ++
Sbjct: 793 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 822
Score = 57.2 bits (132), Expect = 2e-08
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Frame = +2
Query: 11 NMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIP 190
N M CDPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K + P
Sbjct: 300 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 359
Query: 191 P--------RGLKMAATFIGNSTAIQELFS 256
P ++ A + N+TA+ E ++
Sbjct: 360 PTVVPGGDLAKVQRAVCMLSNTTAVAEAWA 389
Score = 52.8 bits (121), Expect = 4e-07
Identities = 19/45 (42%), Positives = 32/45 (71%)
Frame = +1
Query: 256 RISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 390
R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 390 RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
Score = 52.8 bits (121), Expect = 4e-07
Identities = 19/45 (42%), Positives = 32/45 (71%)
Frame = +1
Query: 256 RISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 390
R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 823 RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 867
>SB_2674| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 1036
Score = 57.6 bits (133), Expect = 1e-08
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Frame = +2
Query: 11 NMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIP 190
N M CDPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K + P
Sbjct: 885 NQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 944
Query: 191 P--------RGLKMAATFIGNSTAIQELFS 256
P ++ A + N+TAI E ++
Sbjct: 945 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 974
Score = 56.4 bits (130), Expect = 3e-08
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = +2
Query: 11 NMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIP 190
N M CDPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K + P
Sbjct: 364 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 423
Query: 191 P 193
P
Sbjct: 424 P 424
Score = 52.8 bits (121), Expect = 4e-07
Identities = 19/45 (42%), Positives = 32/45 (71%)
Frame = +1
Query: 256 RISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 390
R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 975 RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 1019
>SB_51156| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 377
Score = 57.6 bits (133), Expect = 1e-08
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Frame = +2
Query: 11 NMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIP 190
N M CDPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K + P
Sbjct: 225 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 284
Query: 191 P--------RGLKMAATFIGNSTAIQELFS 256
P ++ A + N+TAI E ++
Sbjct: 285 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 314
Score = 52.8 bits (121), Expect = 4e-07
Identities = 19/45 (42%), Positives = 32/45 (71%)
Frame = +1
Query: 256 RISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 390
R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 315 RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 359
>SB_23895| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 250
Score = 57.6 bits (133), Expect = 1e-08
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Frame = +2
Query: 11 NMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIP 190
N M CDPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K + P
Sbjct: 98 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 157
Query: 191 P--------RGLKMAATFIGNSTAIQELFS 256
P ++ A + N+TAI E ++
Sbjct: 158 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWA 187
Score = 52.8 bits (121), Expect = 4e-07
Identities = 19/45 (42%), Positives = 32/45 (71%)
Frame = +1
Query: 256 RISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 390
R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 188 RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 232
>SB_34400| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 380
Score = 56.8 bits (131), Expect = 2e-08
Identities = 24/79 (30%), Positives = 38/79 (48%)
Frame = +2
Query: 11 NMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIP 190
N M CDPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K +
Sbjct: 299 NQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIRHKA 358
Query: 191 PRGLKMAATFIGNSTAIQE 247
P A + +QE
Sbjct: 359 PGHFSWATVYSTTRNYLQE 377
>SB_51150| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 232
Score = 54.4 bits (125), Expect = 1e-07
Identities = 20/56 (35%), Positives = 32/56 (57%)
Frame = +2
Query: 11 NMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAV 178
N M CDPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K +
Sbjct: 98 NQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGI 153
Score = 53.2 bits (122), Expect = 3e-07
Identities = 19/45 (42%), Positives = 33/45 (73%)
Frame = +1
Query: 256 RISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 390
R++ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 188 RLNHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 232
>SB_5512| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 365
Score = 54.0 bits (124), Expect = 2e-07
Identities = 21/61 (34%), Positives = 33/61 (54%)
Frame = +2
Query: 11 NMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIP 190
N M CDPRHG+Y+ ++RG + K+V+ + I+ K + F +W P K + P
Sbjct: 225 NQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIRPKRTFQFGDWCPTGFKVGINSQP 284
Query: 191 P 193
P
Sbjct: 285 P 285
Score = 52.8 bits (121), Expect = 4e-07
Identities = 19/45 (42%), Positives = 32/45 (71%)
Frame = +1
Query: 256 RISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 390
R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 303 RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 347
>SB_47795| Best HMM Match : Tubulin_C (HMM E-Value=0.24)
Length = 149
Score = 53.2 bits (122), Expect = 3e-07
Identities = 19/45 (42%), Positives = 33/45 (73%)
Frame = +1
Query: 256 RISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 390
R++ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 88 RLNHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 132
>SB_48961| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 536
Score = 52.8 bits (121), Expect = 4e-07
Identities = 19/45 (42%), Positives = 32/45 (71%)
Frame = +1
Query: 256 RISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 390
R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 374 RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 418
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Frame = +2
Query: 74 GRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMAATFIGN 229
G + +K+V+ + I+ K + FV+W P K + PP ++ A + N
Sbjct: 305 GDVVLKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSN 364
Query: 230 STAIQELFS 256
+TAI E ++
Sbjct: 365 TTAIAEAWA 373
>SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 52.8 bits (121), Expect = 4e-07
Identities = 19/45 (42%), Positives = 32/45 (71%)
Frame = +1
Query: 256 RISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 390
R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 542 RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 586
Score = 50.0 bits (114), Expect = 2e-06
Identities = 19/56 (33%), Positives = 32/56 (57%)
Frame = +2
Query: 2 DAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVK 169
+ N M CDPR+G+Y+ ++RG + K+V+ + I+ K + FV+W P K
Sbjct: 428 EPSNQMVKCDPRYGKYMACCLLYRGDVVPKDVNSAIAAIKMKRTIQFVDWCPTGFK 483
>SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32)
Length = 488
Score = 48.8 bits (111), Expect = 6e-06
Identities = 22/81 (27%), Positives = 39/81 (48%)
Frame = +2
Query: 11 NMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIP 190
+ + DP+H YL A I RG + + ++ + + K S F+ W KT +C +P
Sbjct: 347 HQLIKADPKHNLYLACALILRGNVEVSDIRRNIERL--KPSLKFIHWNQEGWKTGLCSVP 404
Query: 191 PRGLKMAATFIGNSTAIQELF 253
P G + + N++ I+ F
Sbjct: 405 PVGQPYSLLTLANNSCIKNTF 425
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/43 (27%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = +1
Query: 259 ISEQFTAMFRRKAFLHWYTG-EGMDEMEFTEAESNMNDLVSEY 384
+ ++F +++RKA +H YT +G++ +F + +++ L+ EY
Sbjct: 428 LKDRFMKLYKRKAHVHHYTHVDGLEVGQFDDGLESLSWLIQEY 470
>SB_57880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 46.0 bits (104), Expect = 4e-05
Identities = 16/36 (44%), Positives = 27/36 (75%)
Frame = +1
Query: 283 FRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 390
+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 13 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 48
>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 40.7 bits (91), Expect = 0.002
Identities = 16/45 (35%), Positives = 29/45 (64%)
Frame = +2
Query: 2 DAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSS 136
D N M CDPRHG+Y+ ++RG + + ++D + N+ +K++S
Sbjct: 1208 DPNNQMVKCDPRHGKYMACCMLYRGDVFIYQLD--ISNMDSKSAS 1250
>SB_25841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 32.7 bits (71), Expect = 0.40
Identities = 32/103 (31%), Positives = 43/103 (41%), Gaps = 7/103 (6%)
Frame = +2
Query: 68 FRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCD---IPPRGLKMAATFIGNSTA 238
FR K V L I+ N+ WI T + D I P G ++ I +
Sbjct: 151 FRNNNEQKRVFPAQLTIEKNNALTIGHWIMGKC-TKLLDSRSILPTGYELPTNNITRAAK 209
Query: 239 IQELFSASRNS-SPLCSGARLSCIGTPAR---AWTRWSSPRLR 355
++ELFSA S P+ S + + PAR T SSP LR
Sbjct: 210 VEELFSAQPESLGPVVSVPEANAV--PARVETGGTPASSPNLR 250
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = +1
Query: 736 HNMCNRKPNGGFKIRYLTNADFNAGTCAHFNFCCTECI----KFWDVCH 870
H +C+ P GF+++ TN + C HF C CI F VCH
Sbjct: 3388 HVICSCWP--GFELKPFTNKCEDVNECLHFGVCSQRCINTRGSFKCVCH 3434
>SB_30009| Best HMM Match : RVT_1 (HMM E-Value=1.2e-18)
Length = 552
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = +1
Query: 175 RVRHSPSWSQDGRHLHRKLHRHPGAVQRISEQFTAMFRRKAFLH 306
R+ +S +W D +++H K+ + G ++R +++F ++ R F H
Sbjct: 385 RLDNSLTWDNDLKYIHNKISKRLGLLKR-TKKFLSLKARTLFYH 427
>SB_47142| Best HMM Match : Tubulin (HMM E-Value=5.32493e-44)
Length = 474
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +1
Query: 238 HPGAVQRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 384
H G + ++ + MF +A++H Y G+ E F ++ + + +V Y
Sbjct: 423 HVGPLSKVVGKAWTMFASRAYVHQYLRFGISEDAFVDSFACLEQVVKNY 471
>SB_56133| Best HMM Match : FecCD (HMM E-Value=0)
Length = 357
Score = 28.7 bits (61), Expect = 6.6
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Frame = -3
Query: 354 LSLGELHLVHALAGVPMQESLAPEHSGELFRDALNSSWMAVEFPMKVAAILRPRGGMSHT 175
LSL V AL + + ++A H G L D L + +AV F M A+ L G H
Sbjct: 73 LSLPLAAFVGALVSMLLVLAIA-SHGGRLESDRLLLAGVAVSFVMMAASNLLLFLGDHHA 131
Query: 174 A---VFTLL-GIHSTKYEEFLFWMLSICSSTSFM 85
A +F +L G+ ++E L W+ ++C + + +
Sbjct: 132 ASSVIFWMLGGLGLARWE--LLWLPALCLALALL 163
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,247,413
Number of Sequences: 59808
Number of extensions: 482166
Number of successful extensions: 1269
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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