Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40038
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    78   1e-15
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    27   2.2  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   3.8  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    27   3.8  
SPBC27B12.02 ||SPBC30B4.10|sequence orphan|Schizosaccharomyces p...    25   8.8  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    25   8.8  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 78.2 bits (184), Expect = 1e-15
 Identities = 41/90 (45%), Positives = 57/90 (63%)
 Frame = +3

Query: 255 IVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRF 434
           +V + RL  T +F DKKSY  Y+K YMK + A+L+E  P++V VF+ N    +K IL  F
Sbjct: 68  LVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKILANF 125

Query: 435 KELQFFTGESMDCDGMVAMMEYRDLMVRKY 524
           K+  F+ GESMD D MV +M YR+  +  Y
Sbjct: 126 KDYDFYIGESMDPDAMVVLMNYREDGITPY 155



 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 31/65 (47%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
 Frame = +1

Query: 55  MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQ-GDIQIEGFNPSAEEADEGTD 231
           M +YKD+I+GDE+ SD Y +K VD+++YE   ++VT  Q GD+ I G NPSAE+A+E  +
Sbjct: 1   MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAE 59

Query: 232 SAVES 246
              E+
Sbjct: 60  EGTET 64



 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +2

Query: 503 RLDGTQIPIMMFFKHGLEEEKF 568
           R DG   P M+FFK GL  EKF
Sbjct: 148 REDGIT-PYMIFFKDGLVSEKF 168


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 267 HRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKT 395
           ++L+E   F ++K  T+YLK   + L  K +   PD VE   T
Sbjct: 95  NKLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -1

Query: 92   ISSPVIMSL*IFILMDWRRLKII 24
            ISSP I  + IFILM+  RL +I
Sbjct: 1220 ISSPTIFVINIFILMNQERLNLI 1242


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 114 HFVSVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGF 4
           +F  + + L T +  LI   +  +E+IK  KNR +GF
Sbjct: 503 YFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGF 539


>SPBC27B12.02 ||SPBC30B4.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 109

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 539 KTS*LVFAYHQVSIFHHGNHAITIHGLPSKEL 444
           +T  LV  + +  +  + NH I +H L SK L
Sbjct: 53  ETELLVLRFREFGVKDNHNHPINLHSLRSKSL 84


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 449 ELKFLKPAEDVFHYFVHVCFKYFNLVR 369
           +  FLKP   ++ YF+ +  +Y +L+R
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,138,491
Number of Sequences: 5004
Number of extensions: 64124
Number of successful extensions: 172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)