Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40038
         (755 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43849| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   0.75 
SB_23747| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_43849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 771

 Score = 25.8 bits (54), Expect(2) = 0.75
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = +2

Query: 590 LHNSKLAP*YFCFFIYLSIMSASWQELAFSHHRLNHFV 703
           LH SK    YFC  I L      W   A SHHR++HF+
Sbjct: 61  LHTSK----YFCMLILLQ-----W---ATSHHRVSHFL 86



 Score = 24.2 bits (50), Expect(2) = 0.75
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 677 SHHRLNHFVFKKNYCLPQLNNLTIH 751
           SHHR++H  F  + CLP +   T H
Sbjct: 99  SHHRVSH--FPSSGCLPIIGYPTSH 121


>SB_23747| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 26/102 (25%), Positives = 46/102 (45%)
 Frame = +3

Query: 267  HRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 446
            H+LVE     +++  ++  +D    LVA        Q  VF+ + N V K   G  K   
Sbjct: 734  HKLVEKRLVSNQQQRSIRFRDQRPHLVA--------QGVVFEPDANDVSK---GTLKVTG 782

Query: 447  FFTGESMDCDGMVAMMEYRDLMVRKYQS*CFSNMV*KKRNSK 572
            F  G+++  + +V +  Y D  + +  S   S  + KK ++K
Sbjct: 783  FVRGQTLSANRLVHLAGYGDFQISQIDSVADSFSI-KKSSTK 823


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,586,045
Number of Sequences: 59808
Number of extensions: 445123
Number of successful extensions: 984
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)