Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40036
         (890 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   3e-09
SB_47801| Best HMM Match : An_peroxidase (HMM E-Value=0)               36   0.058
SB_4231| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.23 
SB_106| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   1.7  
SB_24638| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_35419| Best HMM Match : SMC_C (HMM E-Value=1.9e-05)                 29   5.1  
SB_36412| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_17936| Best HMM Match : 7tm_1 (HMM E-Value=0.0002)                  29   6.7  
SB_49274| Best HMM Match : p450 (HMM E-Value=0)                        28   8.8  
SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1565

 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
 Frame = +3

Query: 9    DLVVGMMAEKHLPGSLLGPTATSLFKEQLWRTRIADRYFYSHVNEAGSFSKRQLAELRRV 188
            DL V  +AE  + G+ +GPT   + + Q  R R  DR++Y +    G F K QL E++++
Sbjct: 1138 DLWVSGLAENPVKGASVGPTFLCILRSQFRRLRDGDRFWYEN---NGVFGKEQLEEIKKI 1194

Query: 189  SLARLICDN-TDMKQLQRDVF 248
            SL+R++CDN   +  +QRD F
Sbjct: 1195 SLSRVMCDNLPGIVSVQRDAF 1215


>SB_47801| Best HMM Match : An_peroxidase (HMM E-Value=0)
          Length = 1263

 Score = 35.5 bits (78), Expect = 0.058
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +3

Query: 3    DIDLVVGMMAEKHLPGSLLGPTATSLFKEQLWRTRIADRYFYSH 134
            D+DL VG +AE+H+ G  +G T   +   Q    R  DR++Y +
Sbjct: 1134 DVDLWVGGLAEEHVEGGCVGETFARIIAMQFKVLRDGDRFWYEN 1177


>SB_4231| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 19/44 (43%), Positives = 27/44 (61%)
 Frame = -2

Query: 271 RVAIRSVSNTSLCSCFISVLSQINLASETLRSSASCRLEKLPAS 140
           R+AIR V+  S+CS  +++LSQ+   SET   +ASC     P S
Sbjct: 75  RIAIRLVACPSICSKALNMLSQLCPYSETDSDTASCNSGFSPIS 118


>SB_106| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 381 ITLSLIHLLVRARMSGPSTESCHASKLTFFISSHDTTGL 265
           IT S  H   RA+ +GP        K+ FF+  H T G+
Sbjct: 87  ITSSTAHAYSRAKWTGPELSRHRFRKVPFFVRPHSTKGV 125


>SB_24638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 260 DSNPVVSCEEIKKVNLEAWQDSVEGPDILARTNKWIKDKVIIGE 391
           D   V  C +IK    EA  D VE   +  + N WI+D V+I E
Sbjct: 21  DCEAVSMCVKIKPY--EAVLDDVEKEGLKPKANIWIRDAVVISE 62


>SB_35419| Best HMM Match : SMC_C (HMM E-Value=1.9e-05)
          Length = 867

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -3

Query: 207 KLIWQAKPYVALPVVA*KNYQPRLRGCRNNGPRCEYATIV 88
           +++ Q  P  ++P +    +Q R+     N PRC+Y T++
Sbjct: 329 QIMKQVCPPNSIPQIIISRFQDRVHDVSRNKPRCKYTTVL 368


>SB_36412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 372

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 90  QLWRTRIADRYFYSHVNEAGSFSKRQLAELRRVSLARLICDNTDMKQL 233
           Q WR R     FYS +  A +  KR+ A L R++  ++ C NT   Q+
Sbjct: 43  QKWRMRAP--LFYSFLLTACTARKRENATLSRLNKLKVTCSNTKALQV 88


>SB_17936| Best HMM Match : 7tm_1 (HMM E-Value=0.0002)
          Length = 460

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 542 ILSSITINIGFTTKAAERVVLTIPCCKVAVISKWI 646
           ++SS+TIN  F T  A  +   I   K  +  KWI
Sbjct: 105 VISSVTINASFLTLLALAIAQLISLYKPQIYEKWI 139


>SB_49274| Best HMM Match : p450 (HMM E-Value=0)
          Length = 568

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 366 IHLLVRARMSGPSTESCHASKLTFFISSHDTTGLLSE 256
           I+L  R        ESCHAS +T  +SS  TT  + E
Sbjct: 310 IYLERRQTYENEEQESCHASAITKHLSSFMTTSHMEE 346


>SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2708

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 90   QLWRTRIADRYFYSHVNEA--GSFSKRQLAELRRVSL 194
            QL  T IADR    +VNEA     +KR  A+LR ++L
Sbjct: 2345 QLVTTVIADRSLVKNVNEAELSQIAKRMTADLRALAL 2381


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,610,994
Number of Sequences: 59808
Number of extensions: 605117
Number of successful extensions: 1538
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)