Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40035
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   113   3e-26
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    33   0.055
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    29   1.2  
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    27   2.7  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    27   2.7  
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    27   2.7  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    27   2.7  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    27   3.6  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   3.6  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    26   6.3  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   6.3  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  113 bits (272), Expect = 3e-26
 Identities = 53/94 (56%), Positives = 70/94 (74%)
 Frame = +1

Query: 229 GKKHNDAQSIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGA 408
           GK     ++++  +++ P LE+LLP ++GNVGFVFT  DL EVR+ ++ N + APARP A
Sbjct: 54  GKNTMIRRAMRGIINDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNA 113

Query: 409 IAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 510
           IAPL V +PA NTG+ P KTSFFQAL IPTKI+R
Sbjct: 114 IAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITR 147



 Score = 72.9 bits (171), Expect = 6e-14
 Identities = 34/63 (53%), Positives = 45/63 (71%)
 Frame = +3

Query: 492 PYQDFKGTIEIINDVHILKPGDKVGASEANLLNMLNISPFSYGLVVKQVYDSGIFFALKF 671
           P +  +GTIEI +DVH++    KVG SEA LLNMLNISPF+YG+ V  +YD G  F+ + 
Sbjct: 142 PTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFSPEI 201

Query: 672 LDI 680
           LD+
Sbjct: 202 LDV 204



 Score = 62.5 bits (145), Expect = 8e-11
 Identities = 27/57 (47%), Positives = 40/57 (70%)
 Frame = +2

Query: 92  KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRFSLRGSSIVLMGKNTMMRKASK 262
           K+ YF K+  L ++Y   F+V  DNV SQQM  +R  LRG++ ++MGKNTM+R+A +
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMR 64


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 33.1 bits (72), Expect = 0.055
 Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +1

Query: 259 KDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAP-ARPGAIAPLSVVIP 435
           ++H +N   L KLL    G VG +FT     EV     E+ VQ   AR GA+AP + VIP
Sbjct: 83  EEHAENVSKLTKLL---HGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAVAPFTHVIP 138

Query: 436 A 438
           A
Sbjct: 139 A 139


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -2

Query: 199 ETDLLHLLRAHVIGTHDETFWVLVQELD---DLNEVVRLPSSLV 77
           ++ L+H L  +V G HD +FW L ++L    D  +++  P S V
Sbjct: 197 KSTLIHELTHNVHGEHDSSFWELFRQLTKEADAADLLGKPGSYV 240


>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 190 LLHLLRAHVIGTHDETFWVLVQELDDLNEVVRLPSSLVLPTH 65
           +LH L   + G  D    V++ +L    E +  P  ++ PTH
Sbjct: 284 MLHYLSNIIFGNFDYRLSVIIGDLFTFMEKIAFPCYIMFPTH 325


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 190 LLHLLRAHVIGTHDETFWVLVQELDDLNEVVRLPSSLVLPTH 65
           +LH L   + G  D    V++ +L    E +  P  ++ PTH
Sbjct: 284 MLHYLSNIIFGNFDYRLSVIIGDLFTFMEKIAFPCYIMFPTH 325


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 190 LLHLLRAHVIGTHDETFWVLVQELDDLNEVVRLPSSLVLPTH 65
           +LH L   + G  D    V++ +L    E +  P  ++ PTH
Sbjct: 256 MLHYLSNIIFGNFDYRLSVIIGDLFTFMEKIAFPCYIMFPTH 297


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 190 LLHLLRAHVIGTHDETFWVLVQELDDLNEVVRLPSSLVLPTH 65
           +LH L   + G  D    V++ +L    E +  P  ++ PTH
Sbjct: 284 MLHYLSNIIFGNFDYRLSVIIGDLFTFMEKIAFPCYIMFPTH 325


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -2

Query: 322 QRCP*CVATVSRGLDCCPGGL*CFAHHC 239
           QRCP C   V R   CC     C  H C
Sbjct: 366 QRCPTCDRVVERIDGCCHMNCLCGTHFC 393


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 365 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 267
           L +T  +S    + PTLP +   + S +G+LSR
Sbjct: 35  LKQTVLQSSSFKSFPTLPRLAARNISNSGILSR 67


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = -1

Query: 461 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSF 291
           +G  PV    +  + G++ P  AGAW L  N L    T   +   +NT P  PL  G  F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194

Query: 290 SRAGL 276
           S   L
Sbjct: 195 SEEEL 199


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/67 (22%), Positives = 30/67 (44%)
 Frame = +2

Query: 254 ASKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSF 433
           +S T  T+   +   C TS + L + +P  ++  + TNC  T + +     P+     + 
Sbjct: 517 SSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNC-TTSTSVPYTSTPVTSSNYTI 575

Query: 434 PPTTPAS 454
             +TP +
Sbjct: 576 SSSTPVT 582


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,100,046
Number of Sequences: 5004
Number of extensions: 90670
Number of successful extensions: 288
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)