Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40035
         (890 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    27   0.30 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   3.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.7  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   6.5  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   6.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   8.6  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 309 DVWQQFLEGWIVVQVVFDALRIIVFFPMST 220
           D++ Q  E W  V +V D L++ +FF ++T
Sbjct: 462 DLYIQTREDWKYVAMVIDRLQLYIFFLVTT 491


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 479 WKKEVFSGPRPVLWAGMTTD 420
           WK     GP+PV + G T D
Sbjct: 29  WKSRGVVGPKPVPFFGTTKD 48


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 590 VEKVGFRSSNFVTGLQDVYIVDDFNSTLEIL 498
           V      S N+ TG+ D+++ DD N  +  L
Sbjct: 103 VSPTSLGSENY-TGISDLFVFDDLNDYINRL 132


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 338 RVNTKPTLPLMCGNSFSRAGLL 273
           R +T P    +CG +FSR  LL
Sbjct: 37  RTHTLPCKCHLCGKAFSRPWLL 58


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 664 SAKNIPESYTCLTTRPYENG 605
           S  N PE+ TC  +  Y NG
Sbjct: 162 SCCNSPENNTCSISNSYTNG 181


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 848 NLLLPAAIGPKGSLKP 801
           NLLL A + P  SL+P
Sbjct: 266 NLLLKARLNPNSSLQP 281


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 705 LGTKIFWFECPRISV 661
           L  K+++  CP ISV
Sbjct: 182 LAIKVYYISCPEISV 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 273,629
Number of Sequences: 438
Number of extensions: 6603
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)