Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40035
         (890 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)...    99   3e-21
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)...    99   3e-21
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)       98   8e-21
At1g58220.1 68414.m06612 myb family transcription factor contain...    33   0.34 
At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein con...    31   0.78 
At3g50610.1 68416.m05534 hypothetical protein                          31   1.0  
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put...    29   3.1  
At5g39830.2 68418.m04825 DegP protease, putative contains simila...    29   5.5  
At5g39830.1 68418.m04824 DegP protease, putative contains simila...    29   5.5  
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa...    28   9.6  
At3g56700.1 68416.m06307 male sterility protein, putative simila...    28   9.6  
At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB protein...    28   9.6  

>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
           similar to 60S acidic ribosomal protein P0 GI:2088654
           [Arabidopsis thaliana]
          Length = 323

 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 48/96 (50%), Positives = 68/96 (70%), Gaps = 2/96 (2%)
 Frame = +1

Query: 229 GKKHNDAQSIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARP 402
           GK     +S++ H +N  N A+  LLP ++GNVG +FT+GDL EV +++ + KV APAR 
Sbjct: 56  GKNTMMKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARV 115

Query: 403 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 510
           G +AP+ VV+   NTGL P +TSFFQ L+IPTKI++
Sbjct: 116 GLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINK 151



 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 35/58 (60%), Positives = 44/58 (75%)
 Frame = +3

Query: 507 KGTIEIINDVHILKPGDKVGASEANLLNMLNISPFSYGLVVKQVYDSGIFFALKFLDI 680
           KGT+EII  V ++K GDKVG+SEA LL  L I PFSYGLVV+ VYD+G  F+ + LD+
Sbjct: 151 KGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDL 208



 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 35/64 (54%), Positives = 45/64 (70%)
 Frame = +2

Query: 65  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRFSLRGSSIVLMGKNTM 244
           M +  KA  K  Y  K+ QL+DEY +  +V ADNVGS Q+Q IR  LRG S+VLMGKNTM
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query: 245 MRKA 256
           M+++
Sbjct: 61  MKRS 64


>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
           similar to putative 60S acidic ribosomal protein P0
           GB:P50346 [Glycine max]
          Length = 320

 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 48/96 (50%), Positives = 68/96 (70%), Gaps = 2/96 (2%)
 Frame = +1

Query: 229 GKKHNDAQSIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARP 402
           GK     +S++ H +N  N A+  LLP ++GNVG +FT+GDL EV +++ + KV APAR 
Sbjct: 56  GKNTMMKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARV 115

Query: 403 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 510
           G +AP+ VV+   NTGL P +TSFFQ L+IPTKI++
Sbjct: 116 GLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINK 151



 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 35/58 (60%), Positives = 44/58 (75%)
 Frame = +3

Query: 507 KGTIEIINDVHILKPGDKVGASEANLLNMLNISPFSYGLVVKQVYDSGIFFALKFLDI 680
           KGT+EII  V ++K GDKVG+SEA LL  L I PFSYGLVV+ VYD+G  F+ + LD+
Sbjct: 151 KGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDL 208



 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 35/64 (54%), Positives = 45/64 (70%)
 Frame = +2

Query: 65  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRFSLRGSSIVLMGKNTM 244
           M +  KA  K  Y  K+ QL+DEY +  +V ADNVGS Q+Q IR  LRG S+VLMGKNTM
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query: 245 MRKA 256
           M+++
Sbjct: 61  MKRS 64


>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 
          Length = 317

 Score = 97.9 bits (233), Expect = 8e-21
 Identities = 48/96 (50%), Positives = 66/96 (68%), Gaps = 2/96 (2%)
 Frame = +1

Query: 229 GKKHNDAQSIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARP 402
           GK     +S++ H D   N A   LLP ++GNVG +FT+GDL EV +++ + KV APAR 
Sbjct: 57  GKNTMMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARV 116

Query: 403 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 510
           G +AP+ VV+   NTGL P +TSFFQ L+IPTKI++
Sbjct: 117 GLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINK 152



 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 34/58 (58%), Positives = 43/58 (74%)
 Frame = +3

Query: 507 KGTIEIINDVHILKPGDKVGASEANLLNMLNISPFSYGLVVKQVYDSGIFFALKFLDI 680
           KGT+EII  V ++K GDKVG+SEA LL  L I PFSYGLVV+ VYD+G  F  + L++
Sbjct: 152 KGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDNGSVFNPEVLNL 209



 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 34/59 (57%), Positives = 43/59 (72%)
 Frame = +2

Query: 80  KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRFSLRGSSIVLMGKNTMMRKA 256
           KA  K  Y  K+ QLL+EY +  +V ADNVGS Q+Q IR  LRG S+VLMGKNTMM+++
Sbjct: 7   KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRS 65


>At1g58220.1 68414.m06612 myb family transcription factor contains
           Pfam profile: PF00249: Myb-like DNA-binding domain
          Length = 834

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
 Frame = -1

Query: 554 TGLQDVYIVDDFNSTLEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAPGRAGAWTLF 375
           TGLQ        N  L + VG  R   K++  G  P+L +G  T  GA A G +   TL 
Sbjct: 255 TGLQRTEAQMAANRALSLAVG-NRLPSKKLAVGMTPMLSSG--TIKGAQANGASSGSTLQ 311

Query: 374 SN--------SLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLL 273
                     +LSR +T  P   ++  +    GNS SRA L+
Sbjct: 312 GQQQPQPQIQALSRATTSVPVAKSRVPVKKTTGNSTSRADLM 353


>At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to beta-glucosidase BGQ60 precursor GB:A57512
           [Hordeum vulgare]; similar to beta-mannosidase enzyme
           (GI:17226270) [Lycopersicon esculentum]
          Length = 512

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 2/111 (1%)
 Frame = -1

Query: 653 YSRIIYLLNNKTI*EWRDVQHVEKVGFRSSNFVTGLQDVYIVDDFNSTLEILVGI--ERA 480
           Y+R+I  +  K I  + ++ H + +     N   GL    +V DF    E       +R 
Sbjct: 139 YNRLIDYMVQKGITPYANLYHYD-LPLALENKYKGLLGRQVVKDFADYAEFCYKTFGDRV 197

Query: 479 WKKEVFSGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNT 327
                F+ PR V  A +  DNG  APGR      F N     S   P + T
Sbjct: 198 KNWMTFNEPRVV--AALGYDNGIFAPGRCS--KAFGNCTEGNSATEPYIVT 244


>At3g50610.1 68416.m05534 hypothetical protein
          Length = 229

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
 Frame = +1

Query: 220 RAHGKKHNDAQSIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRD-KLLENKVQAPA 396
           + + + H  A    D +  +P     + H KGNV     + D       KLL+  VQ   
Sbjct: 17  KTNDQDHFKAGFTDDFVPTSPGNSPGVGHKKGNVNVEGFQDDFKPTEGRKLLKTNVQDHF 76

Query: 397 RPGAIAPLSVVIPAHNTGLGPEK 465
           + G+    +   P H+ G+G +K
Sbjct: 77  KTGSTDDFAPTSPGHSPGVGHKK 99


>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 890

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 274 NNPALEKLL--PHIKGNVGFVFTRGDLVEVRDKLL 372
           N P ++K    PHI   VGF+ T+GD+  + D  L
Sbjct: 781 NQPVIDKTRERPHINDWVGFMLTKGDIKSIVDPKL 815


>At5g39830.2 68418.m04825 DegP protease, putative contains
           similarity to DegP protease precursor GI:2565436 from
           [Arabidopsis thaliana]
          Length = 434

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = -1

Query: 584 KVGFRSSNFVTGLQDVYIVDDFNSTLEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMA 405
           KVG +S++   G Q + I + F     + VG+     +++FS     +  G+ TD  A+ 
Sbjct: 231 KVG-QSNSLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQTGVTIGGGIQTD-AAIN 288

Query: 404 PGRAG 390
           PG +G
Sbjct: 289 PGNSG 293


>At5g39830.1 68418.m04824 DegP protease, putative contains
           similarity to DegP protease precursor GI:2565436 from
           [Arabidopsis thaliana]
          Length = 448

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = -1

Query: 584 KVGFRSSNFVTGLQDVYIVDDFNSTLEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMA 405
           KVG +S++   G Q + I + F     + VG+     +++FS     +  G+ TD  A+ 
Sbjct: 231 KVG-QSNSLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQTGVTIGGGIQTD-AAIN 288

Query: 404 PGRAG 390
           PG +G
Sbjct: 289 PGNSG 293


>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 666

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = -1

Query: 425 TDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLP 312
           T+NGA   G A      S SLS  S  SP VN +  LP
Sbjct: 205 TENGAWNEGLAQYDASSSLSLSMPSQNSPNVNNQSGLP 242


>At3g56700.1 68416.m06307 male sterility protein, putative similar
           to SP|Q08891 Male sterility protein 2 {Arabidopsis
           thaliana}; contains Pfam profile PF03015: Male sterility
           protein
          Length = 527

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 284 PSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSK 388
           P R   HT+R    SC   ETS  +VT+    K++
Sbjct: 33  PRRRLSHTTRRVQTSCFYGETSFEAVTSLVTPKTE 67


>At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB
           protein-related similar to ATP-dependent Clp protease,
           ATP-binding subunit ClpB (GI:24982014) [Pseudomonas
           putida KT2440]; similar to  ClpB protein
           (SP:Q9RA63){Thermus thermophilus}
          Length = 422

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = -3

Query: 441 VGGNDD*QWGNGTRTSWSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQ 295
           +G + +  +G+ T      + +LQ      + +S+GE E    +D W Q
Sbjct: 329 IGSHFERCFGSETHLELDKEVILQILAASWSSLSSGEEEGRTIVDQWMQ 377


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,740,999
Number of Sequences: 28952
Number of extensions: 495382
Number of successful extensions: 1498
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1497
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)