BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV40034 (894 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_53268| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 1e-06 SB_57623| Best HMM Match : 7tm_1 (HMM E-Value=6.9e-30) 34 0.18 SB_39617| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38) 31 0.95 SB_52577| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1 SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 29 6.7 SB_53580| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7 SB_49562| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7 SB_15097| Best HMM Match : p450 (HMM E-Value=0) 29 6.7 >SB_53268| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 257 Score = 50.8 bits (116), Expect = 1e-06 Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 14/78 (17%) Frame = +3 Query: 255 ILADNDINSESKIFEAENKQST--------------YLLNKIPRSRKVNQSYFSSVFSTI 392 ++AD D SE K+ E E+KQ Y + +IPRSR+V Q+Y SSV +T+ Sbjct: 174 LIADTDKMSEEKVVEFESKQKPEIFKEEAAEKQHKDYEILRIPRSREVKQTYVSSVLTTL 233 Query: 393 YSTLITVPVIYKFKPNVI 446 Y+ T+P+++ KP+++ Sbjct: 234 YAFKATLPLVHDVKPDLV 251 >SB_57623| Best HMM Match : 7tm_1 (HMM E-Value=6.9e-30) Length = 337 Score = 33.9 bits (74), Expect = 0.18 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 1/112 (0%) Frame = +3 Query: 183 RWPYN*TTAFHEEFKLSEI-LSTVVILADNDINSESKIFEAENKQSTYLLNKIPRSRKVN 359 RWPY + F + ++++IL +N KI + K + Y K K Sbjct: 87 RWPYGRVVCHIQGFSVPMFGFASILILLLIALNRYVKIIKTRAKYNKYFSPK-----KAI 141 Query: 360 QSYFSSVFSTIYSTLITVPVIYKFKPNVIFCNGPGTCIPICVVAFILRIFFY 515 S F++ + + TLI + ++F P +FC G PI AF + F+ Sbjct: 142 ASIFAAFCTGVVGTLI-LNTKFEFDPGKLFCFADGGRTPI-PTAFAIGFLFF 191 >SB_39617| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38) Length = 1084 Score = 31.5 bits (68), Expect = 0.95 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = -1 Query: 627 SCGPCTTTRSAKYWRIFP 574 SCGPC TTR+A W+ P Sbjct: 973 SCGPCNTTRNAPPWQYHP 990 >SB_52577| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 260 Score = 29.1 bits (62), Expect = 5.1 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +1 Query: 553 SKITVIDRENSPIFCRSCCSAWATTERCESSC*NIWVDL 669 SK+T +R + C S C AW + + +C N W D+ Sbjct: 123 SKVTRRERFTNVPLCSSDCDAWFEACKFDYTCSNNWGDM 161 >SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) Length = 6725 Score = 28.7 bits (61), Expect = 6.7 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = -2 Query: 494 KCNYTNWNTSSWTITENNIRLKFIDNRNSN*CRINCTE 381 +CNY W T W + +N R+ +R +N I+CT+ Sbjct: 3092 QCNYA-WGTQCWCVDKNGNRIAGTTSRYNN---ISCTD 3125 >SB_53580| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 940 Score = 28.7 bits (61), Expect = 6.7 Identities = 13/55 (23%), Positives = 29/55 (52%) Frame = +3 Query: 375 SVFSTIYSTLITVPVIYKFKPNVIFCNGPGTCIPICVVAFILRIFFYWIVELFSL 539 SV++ + S ++ +PV+ K F G G C +C++ + + +I ++ +L Sbjct: 683 SVYTVVLSCVVGLPVVLVVKDMPDFTYGLGAC--VCIICTTITLCLMFIPKILAL 735 >SB_49562| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 734 Score = 28.7 bits (61), Expect = 6.7 Identities = 12/29 (41%), Positives = 21/29 (72%) Frame = -2 Query: 350 STPGYFIKQISTLFVFCLKNF*FTVDIVI 264 S GY + +++T F+FC+K FT+D+V+ Sbjct: 17 SNDGY-VSEMTTYFMFCVKISSFTLDLVL 44 >SB_15097| Best HMM Match : p450 (HMM E-Value=0) Length = 1310 Score = 28.7 bits (61), Expect = 6.7 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Frame = +2 Query: 518 DCRIVFIESICRVRSLSLTGKILQYFADLVVVH-GPQLRDVSLRAKIF 658 D RI+ E+ R+R S K+ +YFA L +VH G + +V + + F Sbjct: 132 DRRIIEYEN--RIRQYSTPDKVFRYFASLKIVHSGAEENEVFMTPEDF 177 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 27,990,741 Number of Sequences: 59808 Number of extensions: 590163 Number of successful extensions: 1493 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 1256 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1486 length of database: 16,821,457 effective HSP length: 82 effective length of database: 11,917,201 effective search space used: 2562198215 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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