Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40034
         (894 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18230.1 68417.m02708 expressed protein predicted gene M02B7....    73   3e-13
At5g23050.1 68418.m02695 acyl-activating enzyme 17 (AAE17) nearl...    28   7.3  
At5g59940.1 68418.m07516 DC1 domain-containing protein / UV-B li...    28   9.6  
At4g27830.1 68417.m03997 glycosyl hydrolase family 1 protein con...    28   9.6  
At1g73740.1 68414.m08538 glycosyl transferase family 28 protein ...    28   9.6  

>At4g18230.1 68417.m02708 expressed protein predicted gene M02B7.4,
           Caenorhabditis elegans, PID:G1572781
          Length = 233

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 30/66 (45%), Positives = 49/66 (74%)
 Frame = +3

Query: 309 KQSTYLLNKIPRSRKVNQSYFSSVFSTIYSTLITVPVIYKFKPNVIFCNGPGTCIPICVV 488
           K+++    +I RSR+V QSY +SV++TI + L  + ++ + +P VI CNGPGTCIP+CV+
Sbjct: 111 KEASSQFMQIYRSREVGQSYVTSVWTTIVAILHALWLMIRIRPQVILCNGPGTCIPLCVI 170

Query: 489 AFILRI 506
           AF+ ++
Sbjct: 171 AFLFKV 176



 Score = 34.3 bits (75), Expect = 0.11
 Identities = 27/108 (25%), Positives = 51/108 (47%)
 Frame = +1

Query: 58  LIFTALVIGVIARVIYLLIKIFTTECALYQDSNLRSIFCIGSGGHTTELLRFMRNLNCRK 237
           LI  A+V+ ++ RV+Y++ +            +  ++  +GSGGHT E+L  +  L   +
Sbjct: 21  LIILAIVL-LMVRVLYVIYRC-GKPLPKGASQSFTTLIVLGSGGHTAEMLSLLSVLRKDR 78

Query: 238 YYPRL*FLPITISTVNQKFLRQKTNKVLICLIKYPGVEKSTNPISLLY 381
           + PR     I  +T N     QK       L + P V+++++    +Y
Sbjct: 79  FTPR---FYIAAATDNMSL--QKARSFEDSLAEKPAVKEASSQFMQIY 121



 Score = 31.1 bits (67), Expect = 1.0
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +2

Query: 527 IVFIESICRVRSLSLTGKILQ--YFADLVVVHGPQLRDVSLRAKIFG 661
           I ++ES+ RV+ LSL+G +L     AD   V  PQL     RA   G
Sbjct: 184 IFYVESVARVKKLSLSGLLLYKLRIADQFFVQWPQLHKKYPRAHYVG 230


>At5g23050.1 68418.m02695 acyl-activating enzyme 17 (AAE17) nearly
           identical to acyl-activating enzyme 17 [Arabidopsis
           thaliana] GI:29893266; similar to acetyl-CoA synthetase
           [SP|P27095] from Methanothrix soehngenii; contains Pfam
           AMP-binding enzyme domain PF00501; identical to cDNA
           acyl-activating enzyme 17 (At5g23050) GI:29893265
          Length = 721

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 788 PCHCGWSMEPWVDHSLVQVGAHAGLAYGFP 877
           P + GW M PW+ ++ +  GA  GL  G P
Sbjct: 396 PTNLGWMMGPWLVYASLINGACMGLYNGSP 425


>At5g59940.1 68418.m07516 DC1 domain-containing protein / UV-B
           light-insensitive protein, putative similar to ULI3
           (UV-B light insensitive) [Arabidopsis thaliana]
           GI:17225050; contains Pfam profile PF03107: DC1 domain
          Length = 651

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 755 YQSVSQGGWQCPCHCGWSMEPWV 823
           ++  SQ GW+   HCG   EP+V
Sbjct: 457 FKYASQRGWEIDVHCGSLSEPFV 479


>At4g27830.1 68417.m03997 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to hydroxyisourate hydrolase (GI:19569603)
           [Glycine max]
          Length = 508

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -2

Query: 803 IHNGRGIANPLGLLTGKME*LKKGLVSYG 717
           I NGRG+ NP GLL  K   L K L+S+G
Sbjct: 107 IPNGRGLINPKGLLFYKN--LIKELISHG 133


>At1g73740.1 68414.m08538 glycosyl transferase family 28 protein
           similar to
           UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)-
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase GB:O07670 [SP|O07670] from Enterococcus
           hirae, ]SP|O07109] from Enterococcus faecalis; contains
           Pfam profile PF04101: Glycosyltransferase family 28
           C-terminal domain
          Length = 431

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = +3

Query: 363 SYFSSVFSTIYSTLITVPVIYKFKPNVIFCNGPGTCIPICVVAFILRIFF 512
           S+       I ST  +  ++ + KP ++   G     P+C  A I R  F
Sbjct: 125 SFLKFPLRLIQSTFESYKILRELKPQIVIGTGGHASFPVCFAAVISRTKF 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,804,533
Number of Sequences: 28952
Number of extensions: 425037
Number of successful extensions: 985
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)