Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40033
         (846 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81533-14|CAB04331.2|  707|Caenorhabditis elegans Hypothetical p...    30   2.4  
U58757-4|AAC47922.3|  580|Caenorhabditis elegans Hypothetical pr...    30   2.4  
Z49910-1|CAA90118.1|  160|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF304128-1|AAG50241.1|  160|Caenorhabditis elegans NADH ubiquino...    29   3.1  
AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical...    28   9.6  

>Z81533-14|CAB04331.2|  707|Caenorhabditis elegans Hypothetical
           protein F36G9.12 protein.
          Length = 707

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 104 FVLWGNFEII*NLIILKVNFIYCILCIR 187
           F LW N E+I ++   KV FI C+ CIR
Sbjct: 250 FSLWTNAELILSVKEQKVGFIKCLDCIR 277


>U58757-4|AAC47922.3|  580|Caenorhabditis elegans Hypothetical
           protein C01B10.4 protein.
          Length = 580

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 583 DKTSTIY*LIKLLIYFN*L*NRNRQYLYSLVYPKHGLLGNNLK-VQSAHRY 732
           DKT  I   +KL I  N L N    YLY   YPKHG   ++L  +   H +
Sbjct: 379 DKTQGIILPLKLQIN-NLLENNVTAYLYEYTYPKHGRHTDDLSYIMGVHAF 428


>Z49910-1|CAA90118.1|  160|Caenorhabditis elegans Hypothetical
           protein F44G4.2 protein.
          Length = 160

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +1

Query: 691 LLGNNLKVQSAHRYIY*RGAVFGPSQGSLIPRPFNWGPGMERLGRNIKPG 840
           +LGN    Q A +++  RG V  PS+ + +   F W  G + +G N+  G
Sbjct: 1   MLGNKFVAQLALQHLRNRGLVNSPSRLTFVRNRFAW--GSDAVGPNVPVG 48


>AF304128-1|AAG50241.1|  160|Caenorhabditis elegans NADH ubiquinone
           oxidoreductaseAGGG subunit protein.
          Length = 160

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +1

Query: 691 LLGNNLKVQSAHRYIY*RGAVFGPSQGSLIPRPFNWGPGMERLGRNIKPG 840
           +LGN    Q A +++  RG V  PS+ + +   F W  G + +G N+  G
Sbjct: 1   MLGNKFVAQLALQHLRNRGLVNSPSRLTFVRNRFAW--GSDAVGPNVPVG 48


>AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical
           protein F35F10.12 protein.
          Length = 471

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 834 FNIPPQPFHTGPPIKGPRD*APLGRAKYGAPLINIPV 724
           FN P + FH G PI G R      + KY A  +NI +
Sbjct: 10  FNQPDEVFHPGKPISG-RVVLSTTKEKYKARAVNIKI 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,972,631
Number of Sequences: 27780
Number of extensions: 217623
Number of successful extensions: 305
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)