Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40032
         (892 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    25   1.1  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   3.2  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    22   5.6  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   5.6  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 112 LFLSWCNVKFFNCLVGLRCLFWWLII 35
           L L    + FF CL+  R L +W+I+
Sbjct: 292 LMLGTVVLAFFICLLPFRALTFWIIV 317


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 112 LFLSWCNVKFFNCLVGLRCLFWWLII 35
           L L    + FF CL+  R    W+I+
Sbjct: 290 LMLGTVVLSFFLCLIPFRVFILWIIL 315


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -1

Query: 193 ICFYWFNRL 167
           ICFYW N +
Sbjct: 317 ICFYWLNEI 325


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 819 FRNQVLRFFLSSSHNITASMTLVFYRFAGEL 727
           FRN     +L +SHN  + +    +RF G L
Sbjct: 292 FRNTKKLQWLDTSHNRISEIPNDLFRFLGNL 322


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,852
Number of Sequences: 336
Number of extensions: 3311
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24720487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)