Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40032
         (892 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81099-2|CAB03188.2|  297|Caenorhabditis elegans Hypothetical pr...    32   0.48 
U40797-14|AAB37544.2|  200|Caenorhabditis elegans Hypothetical p...    31   1.5  
U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n...    30   2.6  
AF016418-2|AAK18901.1|  893|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z81099-2|CAB03188.2|  297|Caenorhabditis elegans Hypothetical
           protein K08F9.3 protein.
          Length = 297

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = +3

Query: 102 LRNKNHQMTATVMMMLRQNLKSSLLNQ*KQIQYVHPKKK---RNHQMTIVVMMN*EKGST 272
           L N+ H +T  V      N   S  N  K+ +++  +KK    N    I++ M   KGS 
Sbjct: 124 LENQFHNLTHAVFTSEFVNENGSFENSHKEQEFLECRKKLGESNSTAKIMIAMGFNKGSC 183

Query: 273 KISCYT 290
           KI C T
Sbjct: 184 KIDCIT 189


>U40797-14|AAB37544.2|  200|Caenorhabditis elegans Hypothetical
           protein C28C12.1 protein.
          Length = 200

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = +2

Query: 47  PKQASKPNQAVKKLNITPAKKQEXXXXXXXXXXVTSKPKKQPVKPIKTNPVRPPQK 214
           PK AS+P  A+  L++TPAKK E             K +++PVK  K      P+K
Sbjct: 39  PKPASQP--ALSPLDLTPAKKVEEKVIEEKKVENNPKKEEEPVKDGKEVVQDQPKK 92


>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 15
            protein.
          Length = 1217

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/61 (27%), Positives = 33/61 (54%)
 Frame = +3

Query: 33   PMMSHQNRHLSPTKQLKNLTLHQLRNKNHQMTATVMMMLRQNLKSSLLNQ*KQIQYVHPK 212
            PM + QN  +   +Q +N+    +++ N+Q  A +    +QNL++  + Q +Q Q + P 
Sbjct: 997  PMQNQQNIPIQHQQQQQNMMNQPMQSNNNQNMANIQN--QQNLQNPPIIQQQQQQQIPPA 1054

Query: 213  K 215
            K
Sbjct: 1055 K 1055


>AF016418-2|AAK18901.1|  893|Caenorhabditis elegans Hypothetical
           protein C49G7.7 protein.
          Length = 893

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 715 FWFRFFHLHCYHRYLLK 665
           FW+ F+H   YH +LLK
Sbjct: 723 FWYLFYHTFYYHDFLLK 739


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,686,437
Number of Sequences: 27780
Number of extensions: 290728
Number of successful extensions: 964
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)