Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40030
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                26   0.40 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   1.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.6  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   1.6  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   6.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.5  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   8.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   8.6  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   8.6  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 830 FFGTSGFTYPKYSTATRPSNGAD 762
           F+GT G+T P+     RP+  AD
Sbjct: 214 FYGTPGYTAPEVIKQNRPTPAAD 236


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 696 RDPHSNIQPRCLRVFPHKQGLRISSIRGTC 785
           RD  S +   C +   HK  L +S+   TC
Sbjct: 490 RDSDSRLLDLCTKFLMHKDSLGLSTATSTC 519


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 211 PEDAISSVKFAPKSNSTCWYLH 276
           PE+ I S  F  + N+TC+  H
Sbjct: 301 PEETIISSVFTTRHNATCYLSH 322


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 211 PEDAISSVKFAPKSNSTCWYLH 276
           PE+ I S  F  + N+TC+  H
Sbjct: 7   PEETIISSVFTTRHNATCYLSH 28


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = -3

Query: 664 SHTNIFTSXCTNYELFANYAH 602
           SH+N++   C N      Y H
Sbjct: 38  SHSNVYQYRCANCTYATKYCH 58


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 396 VHHYMNEQHPENKHQE 349
           +HH M+ QHP  + Q+
Sbjct: 168 MHHQMHTQHPHMQPQQ 183


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 408 ESDLVHHYMN 379
           E DLVH+YMN
Sbjct: 528 EVDLVHNYMN 537


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 408 ESDLVHHYMN 379
           E DLVH+YMN
Sbjct: 528 EVDLVHNYMN 537


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 408 ESDLVHHYMN 379
           E DLVH+YMN
Sbjct: 154 EVDLVHNYMN 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 268,434
Number of Sequences: 438
Number of extensions: 6379
Number of successful extensions: 22
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)