Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40030
(879 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 102 4e-22
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 99 2e-21
At1g69400.2 68414.m07968 transducin family protein / WD-40 repea... 80 2e-15
At1g69400.1 68414.m07969 transducin family protein / WD-40 repea... 80 2e-15
At1g80670.1 68414.m09466 transducin family protein / WD-40 repea... 46 3e-05
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 43 2e-04
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 41 0.001
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea... 40 0.003
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 39 0.004
At1g15470.1 68414.m01860 transducin family protein / WD-40 repea... 39 0.004
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 38 0.007
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 38 0.007
At1g15850.1 68414.m01902 transducin family protein / WD-40 repea... 37 0.015
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 37 0.020
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 36 0.036
At4g18905.1 68417.m02787 transducin family protein / WD-40 repea... 36 0.036
At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf... 35 0.082
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 35 0.082
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 33 0.19
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 33 0.19
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 33 0.19
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 33 0.19
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 33 0.19
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 33 0.19
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 33 0.19
At4g18900.1 68417.m02786 transducin family protein / WD-40 repea... 33 0.25
At3g15610.1 68416.m01980 transducin family protein / WD-40 repea... 33 0.25
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 33 0.25
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 33 0.25
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 33 0.33
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 32 0.44
At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5 ... 32 0.44
At1g29900.1 68414.m03654 carbamoyl-phosphate synthase family pro... 32 0.44
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 32 0.58
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 32 0.58
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea... 32 0.58
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 29 0.59
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 31 0.77
At5g51740.1 68418.m06416 peptidase M48 family protein contains P... 31 1.0
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 31 1.0
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea... 31 1.0
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea... 31 1.0
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 28 1.3
At5g66240.2 68418.m08345 transducin family protein / WD-40 repea... 31 1.3
At5g66240.1 68418.m08344 transducin family protein / WD-40 repea... 31 1.3
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf... 31 1.3
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea... 31 1.3
At2g19430.1 68415.m02267 transducin family protein / WD-40 repea... 31 1.3
At1g74750.1 68414.m08661 pentatricopeptide (PPR) repeat-containi... 31 1.3
At5g50120.1 68418.m06207 transducin family protein / WD-40 repea... 30 1.8
At3g24900.1 68416.m03122 disease resistance family protein / LRR... 30 2.3
At2g34260.2 68415.m04192 transducin family protein / WD-40 repea... 30 2.3
At2g34260.1 68415.m04191 transducin family protein / WD-40 repea... 30 2.3
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 29 3.1
At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4 pro... 29 3.1
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 29 3.1
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 29 3.1
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 29 4.1
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 29 4.1
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 29 4.1
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 29 4.1
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea... 29 4.1
At1g29260.1 68414.m03578 peroxisomal targeting signal type 2 rec... 29 4.1
At2g10500.1 68415.m01106 hypothetical protein similar to At2g108... 29 5.4
At2g05860.1 68415.m00635 hypothetical protein similar to At2g108... 29 5.4
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 29 5.4
At1g12820.1 68414.m01489 transport inhibitor response protein, p... 29 5.4
At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3 pro... 28 7.2
At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat fam... 28 7.2
At4g34380.1 68417.m04884 transducin family protein / WD-40 repea... 28 7.2
At4g29860.1 68417.m04250 transducin family protein / WD-40 repea... 28 7.2
At5g52250.1 68418.m06485 transducin family protein / WD-40 repea... 28 9.5
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 28 9.5
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ... 28 9.5
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 28 9.5
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 28 9.5
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 28 9.5
At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro... 28 9.5
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea... 28 9.5
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 28 9.5
At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf... 28 9.5
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf... 28 9.5
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 102 bits (244), Expect = 4e-22
Identities = 62/210 (29%), Positives = 101/210 (48%), Gaps = 4/210 (1%)
Frame = +3
Query: 258 YLLVSSWDCSVRLYDVTANIERHKYNHELPVLDVCFRDAVHSYSGGLDQTLKMYDLNAST 437
+LLVSSWD SVRLYD ++ R ++ H VLD CF D +S D ++ D NA
Sbjct: 30 HLLVSSWDKSVRLYDANGDLMRGEFKHGGAVLDCCFHDDSSGFSVCADTKVRRIDFNAGK 89
Query: 438 ETILGEHKGAIRCVEFASELNAVLQEAGMEQSKC----GIAEFQTVSALTIREMNGYTQ* 605
E +LG H+ +RCVE++ V+ + + KC G + + T +
Sbjct: 90 EDVLGTHEKPVRCVEYSYAAGQVITGSWDKTIKCWDPRGASGTERTQIGTYMQPERVNSL 149
Query: 606 A*LAKSS*LVHXDVKIFVWDVRNMGHVNQRRDPHSNIQPRCLRVFPHKQGLRISSIRGTC 785
+ + + + ++D+RNM QRR+ Q RC+R +P+ G +SS+ G
Sbjct: 150 SLVGNRLVVATAGRHVNIYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRV 209
Query: 786 CGGVFWVXKS*GAEEEIMPFKCPPGLKEGR 875
F + ++ A+ + FKC ++GR
Sbjct: 210 SMEFFDLSEA--AQAKKYAFKCHRKSEDGR 237
Score = 48.4 bits (110), Expect = 6e-06
Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPN-----CVGTYNQGNERVYTMSIVGEKFVVGTSGRK-NICMGRS 670
TGSWD T+K WD R + +GTY Q ERV ++S+VG + VV T+GR NI R+
Sbjct: 114 TGSWDKTIKCWDPRGASGTERTQIGTYMQ-PERVNSLSLVGNRLVVATAGRHVNIYDLRN 172
Query: 671 *HGACKSKEGSSLQYPT 721
+ + SSL+Y T
Sbjct: 173 -MSQPEQRRESSLKYQT 188
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 99 bits (238), Expect = 2e-21
Identities = 67/212 (31%), Positives = 103/212 (48%), Gaps = 6/212 (2%)
Frame = +3
Query: 258 YLLVSSWDCSVRLYDVTANIERHKYNHELPVLDVCFRDAVHSYSGGLDQTLKMYDLNAST 437
+LLVSSWD VRLYDV+ N + ++ H VLD CF D +S G D ++ N
Sbjct: 31 HLLVSSWDKRVRLYDVSTNSLKGEFLHGGAVLDCCFHDDFSGFSVGADYKVRRIVFNVGK 90
Query: 438 ETILGEHKGAIRCVEFASELNAVLQEAGMEQSKCGIAEFQTVSALTIREMNGYTQ*A*LA 617
E ILG H A+RCVE++ V+ + + KC + + S ++ Y Q +
Sbjct: 91 EDILGTHDKAVRCVEYSYAAGQVITGSWDKTVKCW--DPRGASGPERTQVGTYLQPERVY 148
Query: 618 KSS*LVHXDV------KIFVWDVRNMGHVNQRRDPHSNIQPRCLRVFPHKQGLRISSIRG 779
S + H V + ++D+RNM QRR+ Q RC+R +P+ G +SS+ G
Sbjct: 149 SMSLVGHRLVVATAGRHVNIYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEG 208
Query: 780 TCCGGVFWVXKS*GAEEEIMPFKCPPGLKEGR 875
F + ++ A+ + FKC + GR
Sbjct: 209 RVAMEFFDLSEA--AQAKKYAFKCHRKSEAGR 238
Score = 53.6 bits (123), Expect = 2e-07
Identities = 37/77 (48%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNC-----VGTYNQGNERVYTMSIVGEKFVVGTSGRK-NICMGRS 670
TGSWD TVK WD R + VGTY Q ERVY+MS+VG + VV T+GR NI R+
Sbjct: 115 TGSWDKTVKCWDPRGASGPERTQVGTYLQP-ERVYSMSLVGHRLVVATAGRHVNIYDLRN 173
Query: 671 *HGACKSKEGSSLQYPT 721
+ + SSL+Y T
Sbjct: 174 -MSQPEQRRESSLKYQT 189
>At1g69400.2 68414.m07968 transducin family protein / WD-40 repeat
family protein similar to mitotic checkpoint protein
(GI:9294423) {Arabidopsis thaliana}; similar to mitotic
checkpoint protein (BUB3) (SP:O43684) (Homo sapiens)
Length = 272
Score = 79.8 bits (188), Expect = 2e-15
Identities = 54/205 (26%), Positives = 95/205 (46%)
Frame = +3
Query: 261 LLVSSWDCSVRLYDVTANIERHKYNHELPVLDVCFRDAVHSYSGGLDQTLKMYDLNASTE 440
LLV+SWD +RLYDV ++ + N + +LD CF + S++ G D ++ YDLNA T
Sbjct: 28 LLVASWDSYLRLYDVESSSLSLELNSQAALLDCCFENESTSFTSGSDGFIRRYDLNAGTV 87
Query: 441 TILGEHKGAIRCVEFASELNAVLQEAGMEQSKCGIAEFQTVSALTIREMNGYTQ*A*LAK 620
+G H + ++ E V+ E+ K Q S + + G ++
Sbjct: 88 DTIGRHDDISTSIVYSYEKGEVISTGFDEKIKFWDTR-QRESLVFSTDAGGAVGCVTVSG 146
Query: 621 SS*LVHXDVKIFVWDVRNMGHVNQRRDPHSNIQPRCLRVFPHKQGLRISSIRGTCCGGVF 800
++ +V D + ++D+RN+ Q + RC+ P+ +G + S+ G V
Sbjct: 147 NNLVVCVDASMHIYDLRNLDEAFQSYASQVEVPIRCITSVPYSRGYAVGSVDGRV--AVD 204
Query: 801 WVXKS*GAEEEIMPFKCPPGLKEGR 875
+ S +E + F+C P + GR
Sbjct: 205 FPNTSCSSEIK-YSFRCHPKSRNGR 228
>At1g69400.1 68414.m07969 transducin family protein / WD-40 repeat
family protein similar to mitotic checkpoint protein
(GI:9294423) {Arabidopsis thaliana}; similar to mitotic
checkpoint protein (BUB3) (SP:O43684) (Homo sapiens)
Length = 314
Score = 79.8 bits (188), Expect = 2e-15
Identities = 54/205 (26%), Positives = 95/205 (46%)
Frame = +3
Query: 261 LLVSSWDCSVRLYDVTANIERHKYNHELPVLDVCFRDAVHSYSGGLDQTLKMYDLNASTE 440
LLV+SWD +RLYDV ++ + N + +LD CF + S++ G D ++ YDLNA T
Sbjct: 28 LLVASWDSYLRLYDVESSSLSLELNSQAALLDCCFENESTSFTSGSDGFIRRYDLNAGTV 87
Query: 441 TILGEHKGAIRCVEFASELNAVLQEAGMEQSKCGIAEFQTVSALTIREMNGYTQ*A*LAK 620
+G H + ++ E V+ E+ K Q S + + G ++
Sbjct: 88 DTIGRHDDISTSIVYSYEKGEVISTGFDEKIKFWDTR-QRESLVFSTDAGGAVGCVTVSG 146
Query: 621 SS*LVHXDVKIFVWDVRNMGHVNQRRDPHSNIQPRCLRVFPHKQGLRISSIRGTCCGGVF 800
++ +V D + ++D+RN+ Q + RC+ P+ +G + S+ G V
Sbjct: 147 NNLVVCVDASMHIYDLRNLDEAFQSYASQVEVPIRCITSVPYSRGYAVGSVDGRV--AVD 204
Query: 801 WVXKS*GAEEEIMPFKCPPGLKEGR 875
+ S +E + F+C P + GR
Sbjct: 205 FPNTSCSSEIK-YSFRCHPKSRNGR 228
>At1g80670.1 68414.m09466 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400) (1
weak); similar to Hypothetical RAE1-like
protein.(SP:Q38942) [Arabidopsis thaliana]; similar to
mRNA-associated protein mrnp 41 ((mRNA export protein)
(GB:AAC28126) (GI:1903456)(RAE1) (MRNP41) (SP:P78406)
[Homo sapiens]
Length = 349
Score = 46.0 bits (104), Expect = 3e-05
Identities = 24/50 (48%), Positives = 31/50 (62%)
Frame = +2
Query: 506 ATGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFVVGTSGRKNI 655
ATGSWD T+K WD+R N V T Q ++ YT+S+ VVGT+ R I
Sbjct: 130 ATGSWDKTLKYWDTRQQNPVHT-QQLPDKCYTLSVKHPLMVVGTADRNLI 178
Score = 42.7 bits (96), Expect = 3e-04
Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 10/183 (5%)
Frame = +3
Query: 261 LLVSSWDCSVRLYDVT------ANIERHKYNHELPVLDVCFRD-AVHSYSGGLDQTLKMY 419
L+ +SWD VR ++++ A+ + +H+ PVL ++D +SGG D+ KM+
Sbjct: 40 LVATSWDNQVRCWEISRSGASLASAPKASISHDQPVLCSAWKDDGTTVFSGGCDKQAKMW 99
Query: 420 DLNASTETI-LGEHKGAIRCVEFASELNAVLQEAGMEQSKCGIAEFQTVSALTIREMNGY 596
L + + + + H+G I + + +N + + + K Q Y
Sbjct: 100 PLLSGGQPVTVAMHEGPIAAMAWIPGMNLLATGSWDKTLKYWDTRQQNPVHTQQLPDKCY 159
Query: 597 TQ*A*LAKSS*LV--HXDVKIFVWDVRNMGHVNQRRDPHSNIQPRCLRVFPHKQGLRISS 770
T K +V D + V++++N +R Q RC+ FP +QG + S
Sbjct: 160 TL---SVKHPLMVVGTADRNLIVFNLQNPQTEFKRIQSPLKYQTRCVTAFPDQQGFLVGS 216
Query: 771 IRG 779
I G
Sbjct: 217 IEG 219
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 43.2 bits (97), Expect = 2e-04
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Frame = +3
Query: 183 AHRVQIKKLTRRRYF-ER*ICTEI*QYLLVSSWDCSVRLYDVTANIERHKY-NHELPVLD 356
A+ V ++LT +F E + + Q+ L SWD +RL+D+ A + ++ H VL
Sbjct: 51 AYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLS 110
Query: 357 VCFR-DAVHSYSGGLDQTLKMYDLNASTETILGE----HKGAIRCVEFA 488
V F D S D+T+K+++ + + E H+ + CV F+
Sbjct: 111 VAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFS 159
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 40.7 bits (91), Expect = 0.001
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Frame = +3
Query: 183 AHRVQIKKLTRRRYF-ER*ICTEI*QYLLVSSWDCSVRLYDV-TANIERHKYNHELPVLD 356
++ V ++LT +F E + + Q+ L SWD +RL+D+ T R H VL
Sbjct: 51 SYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLATGETTRRFVGHTKDVLS 110
Query: 357 VCF-RDAVHSYSGGLDQTLKMYDLNASTETILGE---HKGAIRCVEFA 488
V F D S D+T+K+++ + + E HK + CV F+
Sbjct: 111 VAFSTDNRQIVSASRDRTIKLWNTLGECKYTISEGDGHKEWVSCVRFS 158
>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
family protein contains Pfam profile:PF00560 Leucine
Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
Length = 407
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +2
Query: 506 ATGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSI-VGEKFVVGTS 640
ATG +GTV +WDS + NCV TY+ + V +S+ F+V S
Sbjct: 344 ATGCANGTVSIWDSLLGNCVHTYHGHQDAVQAISVSTNTDFIVSVS 389
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 39.1 bits (87), Expect = 0.004
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Frame = +3
Query: 255 QYLLVSSWDCSVRLYDV-TANIERHKYNHELPVLDVCF-RDAVHSYSGGLDQTLKMYDLN 428
Q+ L SWD +RL+D+ T R H VL V F D S D+T+K+++
Sbjct: 76 QFALSGSWDGELRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSASRDRTIKLWNTL 135
Query: 429 ASTETILGE---HKGAIRCVEFA 488
+ + E HK + CV F+
Sbjct: 136 GECKYTISEADGHKEWVSCVRFS 158
>At1g15470.1 68414.m01860 transducin family protein / WD-40 repeat
family protein Strong similarity to gb AF096285
serine-threonine kinase receptor-associated protein from
Mus musculus and contains 5 PF|00400 WD40, G-beta repeat
domains. EST gb|F14050 comes from this gene
Length = 333
Score = 39.1 bits (87), Expect = 0.004
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +3
Query: 270 SSWDCSVRLYDVTANIERHKYNHELPVLDVCFRDAVHSY-SGGLDQTLKMYDLNA--STE 440
+S D + ++++ E H + H+ V F + H +GG+++ L+++DLN +
Sbjct: 74 ASADFTAKIWNALTGDELHSFEHKHIVRACAFSEDTHRLLTGGMEKILRIFDLNRPDAPP 133
Query: 441 TILGEHKGAIRCVEFASELNAVL 509
+G G+IR VE+ N +L
Sbjct: 134 KEVGNSPGSIRTVEWLHSDNTIL 156
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 38.3 bits (85), Expect = 0.007
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +3
Query: 255 QYLLVSSWDCSVRLYDVTAN---IERHKYNHELPVLDVCFR-DAVHSYSGGLDQTLKMYD 422
Q L SSWD +VRL+DV A+ +E ++NH+ VL V FR D S LD + +D
Sbjct: 490 QLLASSSWDYTVRLWDVFASKGTVETFRHNHD--VLTVAFRPDGKQLASSTLDGQINFWD 547
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 38.3 bits (85), Expect = 0.007
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +3
Query: 255 QYLLVSSWDCSVRLYDVTAN---IERHKYNHELPVLDVCFR-DAVHSYSGGLDQTLKMYD 422
Q L SSWD +VRL+DV A+ +E ++NH+ VL V FR D S LD + +D
Sbjct: 530 QLLASSSWDYTVRLWDVFASKGTVETFRHNHD--VLTVAFRPDGKQLASSTLDGQINFWD 587
>At1g15850.1 68414.m01902 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
mRNA-associated protein mrnp 41 (SP:P78406) [Homo
sapiens]; similar to mitotic checkpoint protein
GI:9294423 from [Arabidopsis thaliana]
Length = 140
Score = 37.1 bits (82), Expect = 0.015
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Frame = +3
Query: 261 LLVSSWDCSVRLYDVT------ANIERHKYNHELPVLDVCFR-DAVHSYSGGLDQTLKMY 419
L+ +SWDC VR +++T A+ + +H+ PVL ++ D ++GG D+ KM+
Sbjct: 41 LVATSWDCQVRCWEITRSDGSIASEPKVSMSHDQPVLCSAWKDDGTTVFTGGCDKQAKMW 100
Query: 420 DL 425
L
Sbjct: 101 PL 102
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 36.7 bits (81), Expect = 0.020
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFVVGTSGRKNI 655
T + DGTVKMWD R CV T + + + ++ ++ +GR +
Sbjct: 955 TAAHDGTVKMWDVRTDMCVATVGRCSSAILSLEYDDSTGILAAAGRDTV 1003
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 35.9 bits (79), Expect = 0.036
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = +2
Query: 521 DGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFVVGTSG 643
DG +K+W+ C+ TY+Q ++V+ +++ + ++ T G
Sbjct: 604 DGLLKLWNVNTSECIATYDQHEDKVWALAVGKKTEMIATGG 644
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFVVGTSG 643
TGS D TV++W++ +C+G N + ++ + F SG
Sbjct: 421 TGSKDKTVRLWNATSKSCIGVGTGHNGDILAVAFAKKSFSFFVSG 465
>At4g18905.1 68417.m02787 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 494
Score = 35.9 bits (79), Expect = 0.036
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = +2
Query: 506 ATGSWDGTVKMWD--SRVPNCVGTYNQGNERVYTMSI-VGEKFVVGTSGRK 649
ATGS D +VK+WD + P+C+ T+ V+++S V F++ G K
Sbjct: 421 ATGSMDKSVKLWDLSNNEPSCIATHQPNAGAVFSISFAVDNPFLLAIGGSK 471
>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 825
Score = 34.7 bits (76), Expect = 0.082
Identities = 13/46 (28%), Positives = 28/46 (60%)
Frame = +3
Query: 348 VLDVCFRDAVHSYSGGLDQTLKMYDLNASTETILGEHKGAIRCVEF 485
VLD+ + + H S +D+T++++DL++ T + H + C++F
Sbjct: 471 VLDLSWSKSQHLLSSSMDKTVRLWDLSSKTCLKVFSHSDYVTCIQF 516
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +3
Query: 255 QYLLVSSWDCSVRLYDVTANIERHKYNHELPVLDVCFRDAVHSY--SGGLDQTLKMYDL 425
Q+LL SS D +VRL+D+++ ++H V + F +Y SG LD ++++ +
Sbjct: 480 QHLLSSSMDKTVRLWDLSSKTCLKVFSHSDYVTCIQFNPVDDNYFISGSLDAKVRIWSI 538
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 642 DVKIFVWDVRNMGHVNQRRDPHSNIQPRCLRVFPHKQGLRISSIRGTCC 788
D K+ +W + + V+ D H + C P QG + S +GTCC
Sbjct: 530 DAKVRIWSIPDHQVVDWN-DLHEMVTAACYT--PDGQGALVGSYKGTCC 575
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 34.7 bits (76), Expect = 0.082
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Frame = +3
Query: 195 QIKKLTRRRYFER*IC-TEI*QYLLVS-SWDCSVRLYDVTANIERHKYNHELPVLDVCFR 368
QIKK+ F C T L++S S D + +L+D+ + + + V F
Sbjct: 130 QIKKMAEHSSFVNSCCPTRRGPPLIISGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFS 189
Query: 369 DAVHS-YSGGLDQTLKMYDLNASTETI-LGEHKGAIRCVEFASELNAVLQEAGMEQSKC 539
DA ++GG+D +K++DL T+ L H+ I + + + + L GM+ C
Sbjct: 190 DAADKIFTGGVDNDVKVWDLRKGEATMTLEGHQDTITGMSLSPD-GSYLLTNGMDNKLC 247
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTY 574
+GS DGTVK+WD R P C Y
Sbjct: 95 SGSEDGTVKIWDLRAPGCQKEY 116
Score = 31.5 bits (68), Expect = 0.77
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Frame = +3
Query: 255 QYLLVSSWDCSVRLYDVTANIERHKY---NHELPVLDVCFR-DAVHSYSGGLDQTLKMYD 422
++ L ++ + +RL+DV +N + +H V+ V F+ DA YSG D T+K++D
Sbjct: 47 KHYLAAACNPHIRLFDVNSNSPQPVMTYDSHTNNVMAVGFQCDAKWMYSGSEDGTVKIWD 106
Query: 423 LNA 431
L A
Sbjct: 107 LRA 109
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/50 (24%), Positives = 23/50 (46%)
Frame = +2
Query: 506 ATGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFVVGTSGRKNI 655
AT S+D T++ W++ C T + V + I +K + + +I
Sbjct: 9 ATASYDHTIRFWEAETGRCYRTIQYPDSHVNRLEITPDKHYLAAACNPHI 58
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 33.5 bits (73), Expect = 0.19
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIV--GEKFVVG-TSGRKNICMGR 667
TGS DGTV++W + T N G ERV+ + + + V+G G + +GR
Sbjct: 246 TGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYIKSSRRVVIGYDEGTIMVKLGR 301
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 33.5 bits (73), Expect = 0.19
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIV--GEKFVVG-TSGRKNICMGR 667
TGS DGTV++W + T N G ERV+ + + + V+G G + +GR
Sbjct: 246 TGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYIKSSRRVVIGYDEGTIMVKLGR 301
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 33.5 bits (73), Expect = 0.19
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIV--GEKFVVG-TSGRKNICMGR 667
TGS DGTV++W + T N G ERV+ + + + V+G G + +GR
Sbjct: 246 TGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYIKSSRRVVIGYDEGTIMVKLGR 301
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +3
Query: 336 HELPVLDVCFRDAVHSYSGGLDQTLKMYDLNASTETILGEHKGAIRCVEF 485
H VLD+ + + H S +D+T+++++L++ T + H + C++F
Sbjct: 512 HVDDVLDLAWSKSQHLLSSSMDKTVRLWNLSSQTCLKVFSHSDYVTCIQF 561
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 33.5 bits (73), Expect = 0.19
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMS-IVGEKFVV 631
TGS DGTV++W + T N G ERV+ + I G + VV
Sbjct: 246 TGSEDGTVRIWHATTYRLENTLNYGLERVWAIGHIKGSRRVV 287
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFVVGT 637
TGS D T K+WD + +CV T V +S E ++ T
Sbjct: 204 TGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVSFHPELPIIIT 246
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 518 WDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFV-VGTSGRKNICMG 664
+DG ++ + + + N+ NERV T VG+ F+ +S R N C+G
Sbjct: 499 FDGGKQIDEEGIEDAFELLNETNERVRTGLWVGDCFIYTNSSWRLNYCVG 548
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 33.5 bits (73), Expect = 0.19
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIV--GEKFVVG-TSGRKNICMGR 667
TGS DGTV++W + T N G ERV+ + + + V+G G + +GR
Sbjct: 246 TGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYIKSSRRVVIGYDEGTIMVKLGR 301
>At4g18900.1 68417.m02786 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 461
Score = 33.1 bits (72), Expect = 0.25
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Frame = +2
Query: 506 ATGSWDGTVKMWD--SRVPNCVGTYN 577
ATGS D TVK+WD + P+C+ T+N
Sbjct: 386 ATGSKDRTVKLWDLSNNEPSCIATHN 411
>At3g15610.1 68416.m01980 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to serine/threonine kinase receptor associated
protein GB:NP_035629 (SP:Q9Z1Z2) [Mus musculus];
UNR-interacting protein GB:NP_009109 [Homo sapiens]
Length = 341
Score = 33.1 bits (72), Expect = 0.25
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Frame = +3
Query: 270 SSWDCSVRLYDVTANIERHKYNHELPVLDVCF-RDAVHSYSGGLDQTLKMYDLNA--STE 440
+S D S +L+D H + H+ V F +D + +GG ++ L+++DLN +
Sbjct: 79 ASADFSAKLWDALTGDVLHSFEHKHIVRACAFSQDTKYLITGGFEKILRVFDLNRLDAPP 138
Query: 441 TILGEHKGAIR 473
T + + G+IR
Sbjct: 139 TEIDKSPGSIR 149
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 33.1 bits (72), Expect = 0.25
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Frame = +3
Query: 255 QYLLVSSWDCSVRLYDVTAN--IERHKYNHELPVLDVCFR-DAVHSYSGGLDQTLKMYDL 425
++L S D +++++D+ I+ +K H + + F D SGGLD +K++DL
Sbjct: 113 EFLASGSSDANLKIWDIRKKGCIQTYK-GHSRGISTIRFTPDGRWVVSGGLDNVVKVWDL 171
Query: 426 NASTETILGE---HKGAIRCVEF 485
A +L E H+G IR ++F
Sbjct: 172 TAG--KLLHEFKFHEGPIRSLDF 192
Score = 32.7 bits (71), Expect = 0.33
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 506 ATGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFVVGTSGRKNI 655
A+GS D +K+WD R C+ TY + + T+ + V + G N+
Sbjct: 116 ASGSSDANLKIWDIRKKGCIQTYKGHSRGISTIRFTPDGRWVVSGGLDNV 165
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 33.1 bits (72), Expect = 0.25
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +3
Query: 261 LLVSSWDCSVRLYDV--TANIERHKYNHELPVLDVCF-RDAVHSYSGGLDQTLKMYD 422
LL + DC V+++DV + R H V D+CF D + G D+ +K +D
Sbjct: 298 LLSAGMDCKVKIWDVYNSGKCMRTYMGHAKAVRDICFSNDGSKFLTAGYDKNIKYWD 354
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 32.7 bits (71), Expect = 0.33
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 506 ATGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGE 619
A+G DGT+ MWD C+ N V+++S GE
Sbjct: 557 ASGDEDGTIMMWDLSTARCITPLMGHNSCVWSLSYSGE 594
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 506 ATGSWDGTVKMWDSRVPNCV 565
ATGS D TV++WD + CV
Sbjct: 515 ATGSSDKTVRLWDVQTGECV 534
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 32.3 bits (70), Expect = 0.44
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +2
Query: 506 ATGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMS 607
A+ S+D TVK+WD+ + + ++N E VY+++
Sbjct: 515 ASASFDSTVKLWDAELGKMLCSFNGHREPVYSLA 548
>At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to pre-mRNA splicing
factor PRP17 (SP:O60508) [Homo sapiens]
Length = 457
Score = 32.3 bits (70), Expect = 0.44
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +3
Query: 261 LLVSSWDCSVRLYDVTANIERHKYNHELPVLDVCFR-DAVHSY-SGGLDQTLKMYDLNAS 434
LL +DC+ RL+DV +E + + V V F D + + SGG +L+++D+ A+
Sbjct: 220 LLSCGYDCTSRLFDVERGVETQSFKEDEVVGVVKFHPDNCNVFLSGGSKGSLRLWDIRAN 279
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +3
Query: 285 SVRLYDVTANIERHKYNHEL-PVLDVCF 365
S+RL+D+ AN H+Y +L P+LDV F
Sbjct: 270 SLRLWDIRANKFVHEYVRDLGPILDVEF 297
>At1g29900.1 68414.m03654 carbamoyl-phosphate synthase family
protein similar to carbamoylphosphate synthetase
GI:6552726 from [Medicago sativa]; contains Pfam
profiles PF02786: Carbamoyl-phosphate synthase L chain
ATP binding domain, PF00289: Carbamoyl-phosphate
synthase L chain N-terminal domain, PF02787:
Carbamoyl-phosphate synthetase large chain
oligomerisation domain
Length = 1187
Score = 32.3 bits (70), Expect = 0.44
Identities = 23/67 (34%), Positives = 31/67 (46%)
Frame = +3
Query: 396 LDQTLKMYDLNASTETILGEHKGAIRCVEFASELNAVLQEAGMEQSKCGIAEFQTVSALT 575
LD+ + M A I G +I E NA+L E +EQ K GIA+ + AL
Sbjct: 748 LDKHMPMSLSGAGPVRIWGTSPDSIDAAEDRERFNAILDELKIEQPKGGIAKSE-ADALA 806
Query: 576 IREMNGY 596
I + GY
Sbjct: 807 IAKEVGY 813
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 31.9 bits (69), Expect = 0.58
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 506 ATGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFVVGTSGRKNI 655
A+GS D +K+WD R C+ TY V + + V + G NI
Sbjct: 117 ASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNI 166
Score = 28.3 bits (60), Expect = 7.2
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = +3
Query: 255 QYLLVSSWDCSVRLYDVTANIERHKYN-HELPVLDVCFR-DAVHSYSGGLDQTLKMYDLN 428
++ S D +++++D+ H Y H V + F D SGG D +K++DL
Sbjct: 114 EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLT 173
Query: 429 A-STETILGEHKGAIRCVEF 485
A T H+G I+ ++F
Sbjct: 174 AGKLLTEFKSHEGQIQSLDF 193
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 31.9 bits (69), Expect = 0.58
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 506 ATGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFVVGTSGRKNI 655
A+GS D +K+WD R C+ TY V + + V + G NI
Sbjct: 117 ASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNI 166
Score = 28.3 bits (60), Expect = 7.2
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = +3
Query: 255 QYLLVSSWDCSVRLYDVTANIERHKYN-HELPVLDVCFR-DAVHSYSGGLDQTLKMYDLN 428
++ S D +++++D+ H Y H V + F D SGG D +K++DL
Sbjct: 114 EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLT 173
Query: 429 A-STETILGEHKGAIRCVEF 485
A T H+G I+ ++F
Sbjct: 174 AGKLLTEFKSHEGQIQSLDF 193
>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400); G
protein beta subunit-like protein, Schistosoma mansoni,
gb:U30261
Length = 321
Score = 31.9 bits (69), Expect = 0.58
Identities = 12/34 (35%), Positives = 24/34 (70%)
Frame = +2
Query: 506 ATGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMS 607
ATGS D TV++WD ++ + T + N++V++++
Sbjct: 259 ATGSSDRTVRLWDLKMRAAIQTMSNHNDQVWSVA 292
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSI 610
TGS D T+K WD R + T + V M++
Sbjct: 312 TGSHDSTIKFWDLRYGKSMATITNHKKTVRAMAL 345
Score = 27.5 bits (58), Expect(2) = 0.59
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 521 DGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFVVGTSGRKNIC 658
D VK WD + +Y+ VY +++ VV T GR ++C
Sbjct: 233 DKQVKCWDLEQNKVIRSYHGHLHGVYCLALHPTLDVVLTGGRDSVC 278
Score = 23.0 bits (47), Expect(2) = 0.59
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +2
Query: 509 TGSWDGTVKMWD 544
TGS D T+K+WD
Sbjct: 187 TGSADRTIKIWD 198
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 31.5 bits (68), Expect = 0.77
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Frame = +3
Query: 255 QYLLVSSWDCSVRLYDVTAN--IERHKYNHELPVLDVCFR-DAVHSYSGGLDQTLKMYDL 425
++L S D ++R++D I+ +K H + + F D SGGLD +K++DL
Sbjct: 62 EFLASGSSDTNLRVWDTRKKGCIQTYK-GHTRGISTIEFSPDGRWVVSGGLDNVVKVWDL 120
Query: 426 NASTETILGE---HKGAIRCVEF 485
A +L E H+G IR ++F
Sbjct: 121 TAG--KLLHEFKCHEGPIRSLDF 141
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 506 ATGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFVVGTSGRKNI 655
A+GS D +++WD+R C+ TY + T+ + V + G N+
Sbjct: 65 ASGSSDTNLRVWDTRKKGCIQTYKGHTRGISTIEFSPDGRWVVSGGLDNV 114
>At5g51740.1 68418.m06416 peptidase M48 family protein contains Pfam
domain, PF01435: Peptidase family M48
Length = 442
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 725 SWLDIGVRIPPLIYMPHVTNVPYKYFYVXMYQLRTFR 615
SW +G + Y P ++ P +Y+YV YQ+R F+
Sbjct: 57 SWTSLGRNTNRIAYNPFLSQ-PKRYYYVDRYQVRHFK 92
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +2
Query: 506 ATGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFVVGTSGRKNI 655
A+GS D +K+WD R C+ TY V + + + + G N+
Sbjct: 210 ASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWIVSGGEDNV 259
>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 31.1 bits (67), Expect = 1.0
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 255 QYLLVSSWDCSVRLYDVTANIERHKYN-HELPVLDV-CFRDAVHSYSGGLDQTLKMYDLN 428
++ L S D +RL+D+ H Y H V + C H YSGG DQ L + DL
Sbjct: 268 RFCLSGSSDSMIRLWDLGQQRCLHTYAVHTDSVWALACNPSFSHVYSGGRDQCLYLTDL- 326
Query: 429 ASTETIL 449
A+ E++L
Sbjct: 327 ATRESVL 333
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 509 TGSWDGTVKMW--DSRVPNCVGTYNQGNERVYTMSIVGEKFVVGTS 640
TGS DGT+K W D C T+ + V ++ GE +V S
Sbjct: 57 TGSRDGTLKRWAFDEDATFCSATFESHVDWVNDAALAGESTLVSCS 102
>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 31.1 bits (67), Expect = 1.0
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 255 QYLLVSSWDCSVRLYDVTANIERHKYN-HELPVLDV-CFRDAVHSYSGGLDQTLKMYDLN 428
++ L S D +RL+D+ H Y H V + C H YSGG DQ L + DL
Sbjct: 268 RFCLSGSSDSMIRLWDLGQQRCLHTYAVHTDSVWALACNPSFSHVYSGGRDQCLYLTDL- 326
Query: 429 ASTETIL 449
A+ E++L
Sbjct: 327 ATRESVL 333
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 509 TGSWDGTVKMW--DSRVPNCVGTYNQGNERVYTMSIVGEKFVVGTS 640
TGS DGT+K W D C T+ + V ++ GE +V S
Sbjct: 57 TGSRDGTLKRWAFDEDATFCSATFESHVDWVNDAALAGESTLVSCS 102
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSI 610
TGS D T+K WD R + T + V M++
Sbjct: 319 TGSHDTTIKFWDLRYGKTMSTLTHHKKSVRAMTL 352
Score = 26.2 bits (55), Expect(2) = 1.3
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +2
Query: 521 DGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFVVGTSGRKNIC 658
D VK WD + +Y+ VY +++ V+ T GR ++C
Sbjct: 239 DKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTLDVLLTGGRDSVC 284
Score = 23.0 bits (47), Expect(2) = 1.3
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +2
Query: 509 TGSWDGTVKMWD 544
TGS D T+K+WD
Sbjct: 193 TGSADRTIKIWD 204
>At5g66240.2 68418.m08345 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (4 copies, 1 weak); similar to Will die slowly
protein. {Drosophila melanogaster} (SP:Q9V3J8)
{Drosophila melanogaster}
Length = 331
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 500 CSATGSWDGTVKMWDSRVPNCVG 568
C +GS D TV +WD RV C G
Sbjct: 134 CFISGSLDRTVLLWDQRVEKCQG 156
>At5g66240.1 68418.m08344 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (4 copies, 1 weak); similar to Will die slowly
protein. {Drosophila melanogaster} (SP:Q9V3J8)
{Drosophila melanogaster}
Length = 328
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 500 CSATGSWDGTVKMWDSRVPNCVG 568
C +GS D TV +WD RV C G
Sbjct: 131 CFISGSLDRTVLLWDQRVEKCQG 153
>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 709
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/66 (21%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 291 RLYDVTANIERHKYNHELPVLDVCFRDAVHSYSGGLDQTLKMYDLNASTETI-LGEHKGA 467
+++ ++ + H +LD+ + + S +D+T++++ + +S E I + HK
Sbjct: 347 KVFSISETPQHEFRGHTGEILDLSWSEKGFLLSSSVDETVRLWRVGSSDECIRVFSHKSF 406
Query: 468 IRCVEF 485
+ CV F
Sbjct: 407 VTCVAF 412
>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 5 WD-40 repeats (PF00400); similar to beta
transducin-like protein HET-E2C*4
(GP:17225206)[Podospora anserina]
Length = 530
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRV--PNCVGTYNQG 583
TGS+D TVK+WD+RV N + N G
Sbjct: 196 TGSYDHTVKVWDARVHTSNWIAEINHG 222
>At2g19430.1 68415.m02267 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 5
(SP:Q9UGP9) [Homo sapiens]; contains 7 Trp-Asp WD-40
repeats
Length = 367
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCV---GTYNQGNE-RVYTMSIVG-EKFVVGTSGRKNICM 661
TGS DGT ++WD + CV G+ ++ + RV +M++ G E ++V G KN+ +
Sbjct: 218 TGSEDGTARIWDCKTGKCVKVIGSQDKKSRLRVSSMALDGSESWLVCGQG-KNLAL 272
>At1g74750.1 68414.m08661 pentatricopeptide (PPR) repeat-containing
protein low similarity to post-transcriptional control
of chloroplast gene expression CRP1 [Zea mays]
GI:3289002; contains Pfam profile PF01535: PPR repeat
Length = 855
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 741 ETLVGIVVGYWSEDPSFDLHAPCYERPIQIFLRPDVPTTN 622
E + G++V W + + D Y+ +Q LRP+VPT N
Sbjct: 569 EPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCN 608
>At5g50120.1 68418.m06207 transducin family protein / WD-40 repeat
family protein Similar to En/Spm-like transposon protein
(gi:2739374)[Arabidopsis thaliana]; similar to
GTP-binding regulatory protein and WD-repeat protein;
contains 7 WD-40 repeats
Length = 388
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Frame = +3
Query: 267 VSSWDCSVRLYDVTANIERHKYNHELPVLDVCFRDA-------VHSYSGGLDQTLKMYDL 425
V W CS + Y A +E H + L FRD+ H YSGGLD +K++ +
Sbjct: 327 VRLWKCSAKDYSCLAMLEGHL--GPVKCLTGAFRDSRKADEASYHIYSGGLDSQVKVWQV 384
>At3g24900.1 68416.m03122 disease resistance family protein / LRR
family protein contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-2.2
[Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
Length = 884
Score = 29.9 bits (64), Expect = 2.3
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 71 NLR-LEYSQINNSIIVLISVFIPHTRLLPQ*LSHGWRSRAPSSN*KAYPKTLFRALNLHR 247
NL+ L S +N S + + +F LL LS GW S+A S P TL L H
Sbjct: 343 NLKELHLSFLNTSYPINLKLFSSLKYLLLLDLSGGWISQASLSLDSYIPSTLEALLLKHC 402
Query: 248 NLTVLAGIFMGL 283
N++V I L
Sbjct: 403 NISVFPNILKTL 414
>At2g34260.2 68415.m04192 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina}
Length = 296
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 506 ATGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKF-VVGTSG 643
A+G G VK+WD+R +C +N + + M+ + +V TSG
Sbjct: 52 ASGDDKGCVKIWDTRQRSCSHEFNAHEDYISGMTFASDSMKLVVTSG 98
>At2g34260.1 68415.m04191 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina}
Length = 353
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 506 ATGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKF-VVGTSG 643
A+G G VK+WD+R +C +N + + M+ + +V TSG
Sbjct: 109 ASGDDKGCVKIWDTRQRSCSHEFNAHEDYISGMTFASDSMKLVVTSG 155
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +3
Query: 258 YLLVSSWDCSVRLYDVTANIERHKYNHELPVLDVCFRDAVHSY--SGGLDQTLKMYDLNA 431
YLL +S D +VRL+ V +N + H V V F +Y SG +D +++++++
Sbjct: 341 YLLSASMDKTVRLWKVGSNDCLGVFAHNSYVTSVQFNPVNENYFMSGSIDGKVRIWNISG 400
Query: 432 STETILGEHKGAIRCV 479
+ + K I V
Sbjct: 401 CSVVDWADLKDIISAV 416
>At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4
protein (ZFWD4) contains 6 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd4 protein (GI:12057170)
[Arabidopsis thaliana]
Length = 419
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 384 YSGGLDQTLKMYDLNA-STETILGEHKGAI 470
YSG +D+T+KM+DLN L +H G +
Sbjct: 272 YSGSVDKTIKMWDLNTLQCIMTLKQHTGTV 301
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVYTMSIVGEKFVVGTS 640
+GS D T+KMWD C+ T Q V T + +K ++ +S
Sbjct: 273 SGSVDKTIKMWDLNTLQCIMTLKQHTGTV-TSLLCWDKCLISSS 315
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = +3
Query: 348 VLDVCFRDAVHSYSGGLDQTLKMYDLNASTETILGEHKGAIRCVEFA 488
+LD+ + + S +D+T++++D+ T L H + C++F+
Sbjct: 509 ILDLSWSKSQLLLSSSMDKTVRLWDIETKTCLKLFAHNDYVTCIQFS 555
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTY 574
T S D TVK+WDS+ +C+ T+
Sbjct: 364 TASSDCTVKVWDSKTTDCLQTF 385
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNE 589
T S D TV++WD C G N G E
Sbjct: 161 TASKDETVRIWDCASGQCTGVLNLGGE 187
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 366 RDAVHSYSGGLDQTLKMYDLNASTETILGEHKGAIRCVEFA 488
RD+ +G DQT K++D+ + E + R V+FA
Sbjct: 62 RDSSRLITGSADQTAKLWDVKSGKELFTFKFNAPTRSVDFA 102
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 366 RDAVHSYSGGLDQTLKMYDLNASTETILGEHKGAIRCVEFA 488
RD+ +G DQT K++D+ + E + R V+FA
Sbjct: 62 RDSSRLITGSADQTAKLWDVKSGKELFTFKFNAPTRSVDFA 102
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 366 RDAVHSYSGGLDQTLKMYDLNASTETILGEHKGAIRCVEFA 488
RD+ +G DQT K++D+ + E + R V+FA
Sbjct: 62 RDSSRLITGSADQTAKLWDVKSGKELFTFKFNAPTRSVDFA 102
>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
family protein similar to Pop3 (GI:3434986)
[Schizosaccharomyces pombe]; contains Pfam PF00400: WD
domain, G-beta repeat (6 copies, 2 weak);
Length = 312
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNC 562
+GS DG+VK+WD RV C
Sbjct: 101 SGSEDGSVKIWDLRVREC 118
>At1g29260.1 68414.m03578 peroxisomal targeting signal type 2
receptor (PEX7) identical to peroxisomal targeting
signal type 2 receptor (Pex7p) (GI:9502414) [Arabidopsis
thaliana]; WD-40 repeat protein family member; contains
6 WD-40 repeats (PF00400); similar to peroxismal
targeting signal 2 receptor (PTS2R) (Peroxin-7)
(PEX7)(SP:O00628) [Homo sapiens]
Length = 317
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNERVY 598
T SWD TVK+W P V T+ + VY
Sbjct: 124 TSSWDDTVKLWAMDRPASVRTFKEHAYCVY 153
>At2g10500.1 68415.m01106 hypothetical protein similar to At2g10840,
At5g35280, At2g05860, At4g07310, At4g07430, At1g39270
Length = 194
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = -1
Query: 747 YGETLVGIVVGYWSEDPSFD---LHAPCYERPIQ-IFLRPDVPTTN 622
YG ++ +V+G+W D FD C PI +F PD+P +N
Sbjct: 144 YGGGVIVVVLGWWKIDRYFDGPKNVRVCTAGPISTVFPDPDIPKSN 189
>At2g05860.1 68415.m00635 hypothetical protein similar to At2g10840,
At5g35280, At2g10500, At4g07310, At4g07430, At1g39270
Length = 238
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = -1
Query: 747 YGETLVGIVVGYWSEDPSFD---LHAPCYERPIQ-IFLRPDVPTTN 622
YG ++ +V+G+W D FD C PI +F PD+P +N
Sbjct: 188 YGGGVIVVVLGWWKIDRYFDGPKNVRVCTAGPISTVFPDPDIPESN 233
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +3
Query: 330 YNHELPVLDVCFRDAVHSYSGGLDQTLKMYDLNASTETILGEHKGAIRCVEF 485
Y H VLD+ + D+ S D+T++++ + H + CVEF
Sbjct: 269 YGHTGDVLDLAWSDSNLLLSASKDKTVRLWRTGCDQCLHVFHHNNYVTCVEF 320
>At1g12820.1 68414.m01489 transport inhibitor response protein,
putative E3 ubiquitin ligase SCF complex F-box subunit;
similar to transport inhibitor response 1 GI:2352492
from [Arabidopsis thaliana]
Length = 577
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 647 YVXMYQLRTFRQLCSLCIPVHFPDCKCRHSLELCY 543
Y + L F ++ LC+P +P C+ SL L Y
Sbjct: 259 YTSLRSLSGFLEVAPLCLPAFYPICQNLISLNLSY 293
>At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3
protein (ZFWD3) contains 5 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd3 protein (GP:12057168)
{Arabidopsis thaliana}
Length = 472
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 384 YSGGLDQTLKMYDLNA-STETILGEHKGAI 470
YSG +D+T+K++DLN L +H G +
Sbjct: 326 YSGSVDKTIKVWDLNTLQCRMTLKQHIGTV 355
>At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat family
protein contains G-protein beta WD-40 repeats
Length = 539
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGT 571
+GSWD +V++WD CV T
Sbjct: 272 SGSWDMSVRIWDRSSMKCVKT 292
>At4g34380.1 68417.m04884 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Myosin heavy chain kinase B (MHCK
B).(SP:P90648) [Dictyostelium discoideum]
Length = 495
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 512 GSWDGTVKMWDSRVPNCVGTYNQGNE-RVYTMSIVGEKFVVGTSGRKNICMGR 667
GS DG V W+ + G +G++ V + I G + G S KNIC+ R
Sbjct: 342 GSSDGLVNYWERSKRSFTGGILKGHKSAVLCLGIAGNLLLSG-SADKNICVWR 393
>At4g29860.1 68417.m04250 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400); WDVCF
variant 1 (gi:12006981) [Mus musculus]
Length = 386
Score = 28.3 bits (60), Expect = 7.2
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +3
Query: 258 YLLVSSWDCSVRLYDV-TANIERHKYN-HELPVLDVCFRDAVHS-YSGGLDQTLKMYDLN 428
++L D S+ L+D+ A I H PVL + + SGG D + MY+LN
Sbjct: 233 HVLAGYEDGSILLWDIRNAKIPLTSVKFHSEPVLSLSVASSCDGGISGGADDKIVMYNLN 292
Query: 429 AST 437
ST
Sbjct: 293 HST 295
>At5g52250.1 68418.m06485 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to photomorphogenesis repressor PnCOP1
(GI:11127996) [Ipomoea nil]
Length = 385
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +2
Query: 506 ATGSWDGTVKMWDSR 550
A+GS DGTV+MWD R
Sbjct: 184 ASGSDDGTVQMWDPR 198
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNE 589
TGS D T+++WD C G G E
Sbjct: 168 TGSKDETLRVWDCASGQCTGVLKLGGE 194
>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); rab11 binding protein, Bos
taurus, EMBL:AF117897
Length = 905
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +3
Query: 348 VLDVCFRDAVHSYSGGLDQTLKMYDLNASTETILGEHKGAIRCVEF 485
VLD+ + + S +D+T++++D+ + L H + CV+F
Sbjct: 522 VLDLSWSRSQLLLSSSMDKTVRLWDIETQSCLKLFAHNDYVTCVQF 567
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPN-CVGTYNQGNERVYTMSIVGEKFVVGTSGRKNIC 658
+GS D T ++WD+R + V T++ V T+ + + GT C
Sbjct: 222 SGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTC 272
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPN-CVGTYNQGNERVYTMSIVGEKFVVGTSGRKNIC 658
+GS D T ++WD+R + V T++ V T+ + + GT C
Sbjct: 160 SGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTC 210
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPN-CVGTYNQGNERVYTMSIVGEKFVVGTSGRKNIC 658
+GS D T ++WD+R + V T++ V T+ + + GT C
Sbjct: 222 SGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTC 272
>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400); similar to
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]; contains non-consensus (GC) donor splice
sites at introns 4 and 6
Length = 1017
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 506 ATGSWDGTVKMWDSRVPNCVGT 571
A+GS D +VK+W+ NC+GT
Sbjct: 813 ASGSDDCSVKLWNINERNCLGT 834
>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
family protein similar to CPY (GI:3096961) {Chironomus
thummi}; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
Length = 2471
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTYNQGNER 592
TGS DG VK+WD++ + + + +ER
Sbjct: 2392 TGSKDGEVKLWDAKAAKLIHHWPKLHER 2419
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 509 TGSWDGTVKMWDSRVPNCVGTY 574
TGS D T K+WD R + TY
Sbjct: 237 TGSHDKTAKLWDMRTLTLIKTY 258
>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +3
Query: 258 YLLVSSWDCSVRLYDVTANIERHKYNHELPVLDVCFRDAVHSY--SGGLDQTLKMYDL 425
YLL SS D +VRL+ V + + H V V F +Y SG +D ++++D+
Sbjct: 335 YLLSSSVDETVRLWRVGCDECLRTFTHNNFVTCVAFNPVDDNYFISGSIDGKVRIWDV 392
>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +3
Query: 258 YLLVSSWDCSVRLYDVTANIERHKYNHELPVLDVCFRDAVHSY--SGGLDQTLKMYDL 425
YLL SS D +VRL+ V + + H V V F +Y SG +D ++++D+
Sbjct: 335 YLLSSSVDETVRLWRVGCDECLRTFTHNNFVTCVAFNPVDDNYFISGSIDGKVRIWDV 392
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,604,165
Number of Sequences: 28952
Number of extensions: 455963
Number of successful extensions: 1387
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -