Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40029
         (690 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5W6X0 Cluster: Putative uncharacterized protein OSJNBa...    34   2.9  
UniRef50_Q584B1 Cluster: Putative uncharacterized protein; n=1; ...    33   5.0  

>UniRef50_Q5W6X0 Cluster: Putative uncharacterized protein
           OSJNBa0065C11.6; n=3; Oryza sativa|Rep: Putative
           uncharacterized protein OSJNBa0065C11.6 - Oryza sativa
           subsp. japonica (Rice)
          Length = 281

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -1

Query: 180 RSGSMACPRRACHLRRRSWGRMCKRHRTPPCLRRTWL 70
           R   MA  RR   +RRR WGR     R P   +R WL
Sbjct: 88  RRAGMAASRRFRGVRRRPWGRFSAEIRDPSLQKRLWL 124


>UniRef50_Q584B1 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 436

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 174 GSMACPRRACHLRRRSWGRMCKRHR 100
           G + CPR  C+ RR  WG +C RHR
Sbjct: 328 GELKCPR--CYGRRNHWGFICNRHR 350


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 428,597,239
Number of Sequences: 1657284
Number of extensions: 5947718
Number of successful extensions: 10579
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10576
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)