Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40028
         (904 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    27   0.31 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   2.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   8.8  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 152 VIFNLVQISHLTVTVHRYGDLHQFG 78
           V+ N+++ S L+   + YGDLH FG
Sbjct: 344 VLGNIMEASILSPNQNVYGDLHNFG 368


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 30  LQTATAKGSEAVIECTPELMKVTIPMDGD 116
           L  AT KGS+  +  TPE+ K    M+ D
Sbjct: 274 LSPATPKGSKCSMITTPEIKKEVEDMEYD 302


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 331 DAADRDSLAVPVQTFNQYVVVERSTADILLSTRVTPHL 218
           D   + + A+P    N  ++V+    DI+ + R T HL
Sbjct: 307 DKKSKVNFALPELQHNLNILVDMCEQDIIQNDRRTRHL 344


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = -3

Query: 191 RGNFPVEFWPTRLVIFNLVQISHLTVTVHRYGDLHQFGSAFYYRFGAFCRCRLKESET 18
           R + P   +PT L  F  +  + +  T+ ++  +H F    Y     +    L ESET
Sbjct: 264 RTDLPKVPYPTALDFFVFLSFAFIFATIIQFAVVHYFTK--YGSGECYFSSDLSESET 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 261,540
Number of Sequences: 438
Number of extensions: 6591
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)