Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40028
         (904 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23380.1 68417.m03371 hypothetical protein predicted proteins...    31   1.4  
At5g67550.1 68418.m08518 expressed protein                             29   4.2  

>At4g23380.1 68417.m03371 hypothetical protein predicted proteins,
           Arabidopsis thaliana
          Length = 400

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 671 HHRRRHADGEFRAFKFPENHITFNSXGTVTGLLQRVFKGVQCP 799
           HH  R+   + +    P+  IT+++ G   G +Q   KG+ CP
Sbjct: 76  HHLLRNHSVKLKPTSVPKWPITYDNKGQKVGPMQLQLKGISCP 118


>At5g67550.1 68418.m08518 expressed protein
          Length = 439

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +2

Query: 350 NLTKRDSRAFPFDFDEPNVLNITRYEEGKAPEPVLGAIVKQNGKQV--SGEISVSQARRC 523
           +LTK      P+D +  ++LN+T +  GK    ++ + +   G+ +  + +IS S A   
Sbjct: 166 SLTKIQYLLLPYDQNTTHLLNVTTHRLGKGSR-LIQSFLHHKGRSIDLAIKISTSIASLA 224

Query: 524 PW 529
           PW
Sbjct: 225 PW 226


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,553,579
Number of Sequences: 28952
Number of extensions: 468618
Number of successful extensions: 1104
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2129873112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)