Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40026
         (874 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021566-3|CAA16499.1|  353|Caenorhabditis elegans Hypothetical ...    31   0.81 
AF047657-7|AAK18943.1|  424|Caenorhabditis elegans Hypothetical ...    29   4.3  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AL021566-3|CAA16499.1|  353|Caenorhabditis elegans Hypothetical
           protein F08E10.3 protein.
          Length = 353

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
 Frame = -1

Query: 631 FNENTNFRLVFLQKSLIW-FHSFPVIIKKGKNWCLC---LHGF-SIVGIKILDKIYNYNC 467
           F  +  F +V +  ++++ F+SF    +K  N   C   LHG    VG+ ++ K Y    
Sbjct: 262 FQTSIPFAVVIIPLAIVFAFNSFGYYSQKAMNLAFCCALLHGLCESVGVIVVHKPYRDVI 321

Query: 466 GMKLGYFLY 440
           G+K+G  L+
Sbjct: 322 GLKIGRLLF 330


>AF047657-7|AAK18943.1|  424|Caenorhabditis elegans Hypothetical
           protein F37B4.7 protein.
          Length = 424

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -1

Query: 604 VFLQKSLIWFHSFPVIIKKGKNWCLCLHGFSIVGIKILDKIYNYNCGMKLGYFLY 440
           VFL K L+ F +F   +     W + + G S+   ++L+  Y +    ++ YF Y
Sbjct: 66  VFLYKPLLVFEAFSYFLC----WVIFVFGKSVWSQQVLEVFYGWATATEIAYFAY 116


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -3

Query: 671  HSFHSTHDYHEACIQREYQF*ISLSAKIVNLVPFISS 561
            H FHS   +H  CI +E++F     A  V L+P ISS
Sbjct: 6003 HGFHSKM-FH--CISKEFEFFCESFATKVPLIPMISS 6036


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,620,023
Number of Sequences: 27780
Number of extensions: 416808
Number of successful extensions: 857
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)