Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40026
         (874 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.8  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   8.5  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   8.5  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    22   8.5  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    22   8.5  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    22   8.5  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    22   8.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   8.5  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/42 (26%), Positives = 17/42 (40%)
 Frame = -1

Query: 634 AFNENTNFRLVFLQKSLIWFHSFPVIIKKGKNWCLCLHGFSI 509
           AFNE+ +         +IW    P+    G N  L +   S+
Sbjct: 843 AFNESKHIGFTMYTTCVIWLAFVPLYFGTGNNVALRITSMSV 884


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 149 HHYSFSYNYGNINCN 105
           H+ ++ YNY N N N
Sbjct: 90  HNNNYKYNYNNNNYN 104


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 149 HHYSFSYNYGNINCN 105
           H+ ++ YNY N N N
Sbjct: 90  HNNNYKYNYNNNNYN 104


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 149 HHYSFSYNYGNINCN 105
           H+ ++ YNY N N N
Sbjct: 91  HNNNYKYNYNNNNYN 105


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 149 HHYSFSYNYGNINCN 105
           H+ ++ YNY N N N
Sbjct: 91  HNNNYKYNYNNNNYN 105


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 149 HHYSFSYNYGNINCN 105
           H+ ++ YNY N N N
Sbjct: 91  HNNNYKYNYNNNNYN 105


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 149 HHYSFSYNYGNINCN 105
           H+ ++ YNY N N N
Sbjct: 91  HNNNYKYNYNNNNYN 105


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +2

Query: 470 IVVINLIQNLYANY 511
           ++VIN++QNLY  +
Sbjct: 510 MMVINMLQNLYEQF 523


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,627
Number of Sequences: 438
Number of extensions: 5840
Number of successful extensions: 25
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)