Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40026
         (874 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g34940.3 68418.m04122 glycosyl hydrolase family 79 N-terminal...    31   1.0  
At5g34940.2 68418.m04121 glycosyl hydrolase family 79 N-terminal...    31   1.0  
At5g34940.1 68418.m04120 glycosyl hydrolase family 79 N-terminal...    31   1.0  

>At5g34940.3 68418.m04122 glycosyl hydrolase family 79 N-terminal
           domain-containing protein similar to beta-glucuronidase
           precursor [Scutellaria baicalensis] GI:8918740; contains
           Pfam profile PF03662: Glycosyl hydrolase family 79,
           N-terminal domain
          Length = 382

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 573 WNQINDFCRKTNLKLVFSLNA 635
           W+++N F RKT  K++F LNA
Sbjct: 139 WDELNAFFRKTGTKVIFGLNA 159


>At5g34940.2 68418.m04121 glycosyl hydrolase family 79 N-terminal
           domain-containing protein similar to beta-glucuronidase
           precursor [Scutellaria baicalensis] GI:8918740; contains
           Pfam profile PF03662: Glycosyl hydrolase family 79,
           N-terminal domain
          Length = 536

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 573 WNQINDFCRKTNLKLVFSLNA 635
           W+++N F RKT  K++F LNA
Sbjct: 139 WDELNAFFRKTGTKVIFGLNA 159


>At5g34940.1 68418.m04120 glycosyl hydrolase family 79 N-terminal
           domain-containing protein similar to beta-glucuronidase
           precursor [Scutellaria baicalensis] GI:8918740; contains
           Pfam profile PF03662: Glycosyl hydrolase family 79,
           N-terminal domain
          Length = 401

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 573 WNQINDFCRKTNLKLVFSLNA 635
           W+++N F RKT  K++F LNA
Sbjct: 4   WDELNAFFRKTGTKVIFGLNA 24


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,335,293
Number of Sequences: 28952
Number of extensions: 376426
Number of successful extensions: 748
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)