Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40024
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43488| Best HMM Match : BRF1 (HMM E-Value=0.41)                     30   2.1  
SB_28176| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_7222| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.5  
SB_46289| Best HMM Match : DUF1690 (HMM E-Value=0.32)                  28   8.5  
SB_41089| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_43488| Best HMM Match : BRF1 (HMM E-Value=0.41)
          Length = 301

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/33 (48%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
 Frame = +1

Query: 121 LEQSQENKIEVSKETFYK-VSETLKETIAQPKK 216
           LE+S+ ++I  SKETFYK  +  LKE +A+ +K
Sbjct: 109 LERSRRDEIFSSKETFYKEQNAALKEQVAKLEK 141


>SB_28176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 595

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 9/35 (25%), Positives = 23/35 (65%)
 Frame = -1

Query: 348 MDSFLQGLKDSLFSSLEHQVVYILFLVEVLYLFCI 244
           +++F+Q L + ++ S+ H+ +Y   +  + +LFC+
Sbjct: 273 VENFIQNLWEVIYPSMSHRKIYNGGVTAISHLFCV 307


>SB_7222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +1

Query: 127 QSQENKIEVSKETFYKVSETLKETIAQPKKFSLRSLFTKDAEQIKHLNKKQNIYHLMFQR 306
           +SQE     +KE +Y+V     +   Q +   L++      EQIKHLN ++N     ++R
Sbjct: 212 RSQEASQVSNKELYYQVESEFVKRHKQ-EILDLQTTVDTLQEQIKHLNDEKNDIRRSYKR 270


>SB_46289| Best HMM Match : DUF1690 (HMM E-Value=0.32)
          Length = 947

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 112 QEHLEQSQENKIEVSKETFYKVSETLKETIAQP 210
           ++HL  SQEN I    +   +V  T KE I  P
Sbjct: 186 EKHLHMSQENNISRKNKFNLQVERTTKENIKPP 218


>SB_41089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 515 DTEGQKDRRELKSLMKRRI-YNKERKIKYSTRKLVVEENYEESYR 646
           +T  QK +RE   + + +  YN++ K +  TRKL  +ENY  S +
Sbjct: 23  ETRAQKQKRENDQVFENQAGYNRKMK-ETRTRKLNFQENYYVSVK 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,185,427
Number of Sequences: 59808
Number of extensions: 271741
Number of successful extensions: 803
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)