Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40024
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    29   0.043
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   2.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   5.0  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.6  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.7  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 29.1 bits (62), Expect = 0.043
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = +2

Query: 515 DTEGQKDRRELKSLMK-RRIYNKERKIKYSTRKLVVEENYEESYRXKN*WPSV 670
           D + +K   E K ++K +R++ K+RKI    R+ ++EE  +   + KN  P+V
Sbjct: 429 DQKLEKHLIEYKKMLKIKRLFGKDRKIMDMVREKIIEE--KRKNKNKNLTPAV 479


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 172 YRRFPWTLLSCSLVIVLNVLVYFDSHSTCPFSFFFYSLVQILHLQF 35
           Y R    L S +L  +L+     + H++ PFS   YS ++ L+L F
Sbjct: 446 YERDTCLLASDALKQILSAAYNVELHNSSPFS--IYSFLERLNLIF 489


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 172 YRRFPWTLLSCSLVIVLNVLVYFDSHSTCPFSFFFYSLVQILHLQF 35
           Y R    L S +L  +L+     + H++ PFS   YS ++ L+L F
Sbjct: 484 YERDTCLLASDALKQILSAAYNVELHNSSPFS--IYSFLERLNLIF 527


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 109 YFDSHSTCPFSFFF 68
           Y+ S ST PF+F F
Sbjct: 303 YYKSGSTVPFNFMF 316


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 423 TEAKAVWKENLFFTKQDQ 476
           T+A  VW  +LFF+ + +
Sbjct: 110 TDASRVWMPDLFFSNEKE 127


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 423 TEAKAVWKENLFFTKQDQ 476
           T+A  VW  +LFF+ + +
Sbjct: 110 TDASRVWMPDLFFSNEKE 127


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 418 CPQKLKLFGKKIYSSQSKI 474
           CP  L+L  ++ Y  +SK+
Sbjct: 312 CPPNLRLTSERGYEQESKV 330


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 418 CPQKLKLFGKKIYSSQSKI 474
           CP  L+L  ++ Y  +SK+
Sbjct: 402 CPPNLRLTSERGYEQESKV 420


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,946
Number of Sequences: 438
Number of extensions: 2782
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)