Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40024
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73870.1 68414.m08554 zinc finger (B-box type) family protein       31   0.99 
At4g21430.1 68417.m03097 transcription factor jumonji (jmjC) dom...    29   3.0  
At1g44478.1 68414.m05116 hypothetical protein                          29   3.0  
At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein...    29   4.0  
At1g58280.2 68414.m06630 expressed protein                             28   5.3  
At1g58280.1 68414.m06629 expressed protein                             28   5.3  
At3g30845.1 68416.m03973 hypothetical protein                          27   9.2  
At3g25440.1 68416.m03163 group II intron splicing factor CRS1-re...    27   9.2  

>At1g73870.1 68414.m08554 zinc finger (B-box type) family protein
          Length = 392

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +2

Query: 512 GDTEGQKDRRELKSLMKRRIYNKERKIKYSTRKLVVEE 625
           G ++G+++ R L+   KRR     +KI+Y  RKL  E+
Sbjct: 339 GGSDGEREARVLRYKEKRRTRLFSKKIRYEVRKLNAEQ 376


>At4g21430.1 68417.m03097 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain
          Length = 728

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 127 QSQENKIEVSKETFYKVSETLKE 195
           +S+ NKIEV K   +K+SE +KE
Sbjct: 689 KSKANKIEVKKMAIHKISEAVKE 711


>At1g44478.1 68414.m05116 hypothetical protein
          Length = 193

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = +2

Query: 506 YTGDTEGQKDRRELKSLMKRRIYN----KERKIKYSTRKLVVEENYEESYRXK 652
           YT D  G+ D R  +     R++N    KE+K++   +++V   N EE Y  K
Sbjct: 124 YTEDKAGKYDGRRQEFRELERVFNDKLSKEKKLQREEKEIVRMMNTEEKYAAK 176


>At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 595

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 524 GQKDRRELKSLMKRRIYNKERKIKYSTRKLVVEENYEESYR 646
           G +D RE +   KR+   K+ K +Y +  L  E +  +SYR
Sbjct: 343 GSEDSREKRGSKKRKKLKKKSKKQYDSDSLSFEGSGSDSYR 383


>At1g58280.2 68414.m06630 expressed protein
          Length = 338

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +3

Query: 417 VPTEAKAVWKENLFFTKQDQRLLD-GLKFFNTLETQKVKKI 536
           + T+   +WK ++   ++D+ +   G+KFFN L T+K K+I
Sbjct: 225 IETDEDVLWKPDI--REEDKDIATRGVKFFNWLSTRKEKEI 263


>At1g58280.1 68414.m06629 expressed protein
          Length = 276

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +3

Query: 417 VPTEAKAVWKENLFFTKQDQRLLD-GLKFFNTLETQKVKKI 536
           + T+   +WK ++   ++D+ +   G+KFFN L T+K K+I
Sbjct: 163 IETDEDVLWKPDI--REEDKDIATRGVKFFNWLSTRKEKEI 201


>At3g30845.1 68416.m03973 hypothetical protein
          Length = 105

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 115 EHLEQSQENKIEVSKETFYKVSETLKETIAQPKKFSLRSLFTK 243
           + LE  ++++ E    T  K+ +T+KETI      +L++ + K
Sbjct: 63  DELEDLEDDESETMMMTTKKMKKTMKETIMNMNMMTLKTTYLK 105


>At3g25440.1 68416.m03163 group II intron splicing factor
           CRS1-related contains weak similarity to CRS1 [Zea mays]
           gi|9837550|gb|AAG00595
          Length = 380

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +2

Query: 434 SCLERKSILHKARSTTARWFEIL*YTGDTEGQKDRRELKSLMK-RRIYNKERKIKYSTRK 610
           SC + K    K +    RW +   +    E ++   E K L K R+   KE ++  + +K
Sbjct: 38  SCTKLKRKKLKGKRAVVRWLKFFRWKKKKEFERMTSEEKILNKLRKARKKEERLMETMKK 97

Query: 611 LVVEENYEESY 643
           L   E+ E ++
Sbjct: 98  LEPSESAETTH 108


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,768,138
Number of Sequences: 28952
Number of extensions: 209828
Number of successful extensions: 662
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)