Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40021
(381 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 122 1e-28
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 122 1e-28
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 122 1e-28
06_01_0080 + 644021-645463 33 0.10
01_01_0703 - 5425713-5425862,5426302-5426451,5426853-5426964,542... 29 0.94
03_03_0258 - 15905847-15905990,15906088-15906244,15906374-159065... 29 1.2
03_05_0804 + 27835508-27835805,27836372-27836421,27837306-278379... 29 1.6
05_03_0142 - 8866316-8866608,8867652-8867886,8868801-8869076,886... 28 2.9
11_08_0037 + 27859867-27860382,27860471-27861440,27861647-278619... 27 3.8
11_01_0355 + 2679561-2680985,2681183-2682295 27 3.8
06_03_1442 - 30172595-30172606,30172607-30172684,30173034-301734... 27 3.8
06_03_1439 - 30157110-30157121,30157122-30157199,30157549-301579... 27 3.8
06_03_1427 - 30090464-30090475,30090476-30090553,30090903-300913... 27 3.8
06_03_1422 + 30058936-30058975,30059057-30059233,30060848-300610... 27 3.8
01_06_1106 + 34563368-34563679 27 5.0
08_01_0746 - 6959210-6959344,6959467-6959776,6960102-6960589 27 6.6
02_04_0165 - 20489756-20489854,20489930-20490160 27 6.6
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 122 bits (294), Expect = 1e-28
Identities = 54/86 (62%), Positives = 69/86 (80%)
Frame = -3
Query: 259 PMSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNM 80
P+ VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL
Sbjct: 121 PVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAK 180
Query: 79 LNISPFSYGLVVKQVYDSGTIFAPEI 2
L I PFSYGLV+ VYDSG++F+PE+
Sbjct: 181 LGIRPFSYGLVITNVYDSGSVFSPEV 206
Score = 56.8 bits (131), Expect = 5e-09
Identities = 25/49 (51%), Positives = 35/49 (71%)
Frame = -1
Query: 381 KLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPCQSSFPP 235
+L+P + GNVG +FT+GDL EVR+++ + KV APAR G +AP PP
Sbjct: 80 ELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPP 128
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 122 bits (294), Expect = 1e-28
Identities = 54/86 (62%), Positives = 69/86 (80%)
Frame = -3
Query: 259 PMSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNM 80
P+ VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL
Sbjct: 121 PVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAK 180
Query: 79 LNISPFSYGLVVKQVYDSGTIFAPEI 2
L I PFSYGLV+ VYDSG++F+PE+
Sbjct: 181 LGIRPFSYGLVITNVYDSGSVFSPEV 206
Score = 56.8 bits (131), Expect = 5e-09
Identities = 25/49 (51%), Positives = 35/49 (71%)
Frame = -1
Query: 381 KLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPCQSSFPP 235
+L+P + GNVG +FT+GDL EVR+++ + KV APAR G +AP PP
Sbjct: 80 ELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPP 128
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 122 bits (294), Expect = 1e-28
Identities = 54/86 (62%), Positives = 69/86 (80%)
Frame = -3
Query: 259 PMSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNM 80
P+ VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL
Sbjct: 121 PVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAK 180
Query: 79 LNISPFSYGLVVKQVYDSGTIFAPEI 2
L I PFSYGLV+ VYDSG++F+PE+
Sbjct: 181 LGIRPFSYGLVITNVYDSGSVFSPEV 206
Score = 56.8 bits (131), Expect = 5e-09
Identities = 25/49 (51%), Positives = 35/49 (71%)
Frame = -1
Query: 381 KLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPCQSSFPP 235
+L+P + GNVG +FT+GDL EVR+++ + KV APAR G +AP PP
Sbjct: 80 ELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPP 128
>06_01_0080 + 644021-645463
Length = 480
Score = 32.7 bits (71), Expect = 0.10
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 140 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGND 247
I+D N N R K++EERGLL+ GV GG +
Sbjct: 100 IIDGGNEWYENTERREKAMEERGLLYLGMGVSGGEE 135
>01_01_0703 -
5425713-5425862,5426302-5426451,5426853-5426964,
5427120-5427481,5427578-5427712,5427812-5427889,
5427989-5428174,5428266-5428452,5428552-5428658,
5428732-5428806,5428885-5429040,5429165-5429437,
5429548-5429643,5429724-5429814,5429883-5430385
Length = 886
Score = 29.5 bits (63), Expect = 0.94
Identities = 14/51 (27%), Positives = 31/51 (60%)
Frame = -3
Query: 154 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEI 2
E++ +++P D VG S +++ +++ P+S VV+ +Y+S + A +I
Sbjct: 346 EMLPSGFLIRPSD-VGGSVIHIVDHMDLEPWSVPEVVRPLYESSAMVAQKI 395
>03_03_0258 -
15905847-15905990,15906088-15906244,15906374-15906504,
15906991-15907126,15907193-15907464,15907874-15908169,
15908279-15908646,15908922-15908987,15909064-15909129,
15909226-15909297,15909391-15909459,15909549-15909620,
15909708-15909776,15909874-15909945,15910046-15910178,
15911223-15911361
Length = 753
Score = 29.1 bits (62), Expect = 1.2
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 24 PESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSL 146
PE LT RP +G+ FN LR ++ +PT G + S+
Sbjct: 358 PEKNEPLTLRPIASGK-FNQLRTISIISPTAKEGLQKTVSM 397
>03_05_0804 +
27835508-27835805,27836372-27836421,27837306-27837998,
27838077-27838388,27838528-27838698
Length = 507
Score = 28.7 bits (61), Expect = 1.6
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 132 MCTSLMISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDM 257
+CT L I+ L+G+ +A+ V SGP P G T D+
Sbjct: 330 ICTGLGIAPRSIGDLIGVVKAYTTRVGSGPFPTELLGKTGDL 371
>05_03_0142 -
8866316-8866608,8867652-8867886,8868801-8869076,
8869166-8869292,8869869-8870116,8870189-8871104,
8871980-8872086,8872562-8872930
Length = 856
Score = 27.9 bits (59), Expect = 2.9
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 225 PVLWAGMTTDMGQWHQDELELGLCSPTVCHGPQRGL 332
P+L T+ + W + E CS V HGP R L
Sbjct: 193 PILILCPTSVIRNWENEFAEWARCSVAVYHGPNRDL 228
>11_08_0037 +
27859867-27860382,27860471-27861440,27861647-27861991,
27862074-27862693
Length = 816
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 381 KLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAP 280
KLLP VGFV RG V+ +K+++ P
Sbjct: 464 KLLPLDANKVGFVNVRGPHVQAPEKIMDGDYTGP 497
>11_01_0355 + 2679561-2680985,2681183-2682295
Length = 845
Score = 27.5 bits (58), Expect = 3.8
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -2
Query: 371 HTSRATLASCSPAETSLRSVTNCWRTKSKL 282
HTS TL+ SP+ +S+ T+C+ + +
Sbjct: 491 HTSELTLSFSSPSPSSISGYTSCYNNNNMM 520
>06_03_1442 -
30172595-30172606,30172607-30172684,30173034-30173435,
30173503-30173577,30173667-30173822,30173952-30174143,
30174202-30174208,30175866-30175918
Length = 324
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/51 (25%), Positives = 30/51 (58%)
Frame = -3
Query: 154 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEI 2
E++ +++P D G S +++ +++ P+S VV+ +Y+S + A +I
Sbjct: 109 EMLPSGFLIRPSDG-GGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQKI 158
>06_03_1439 -
30157110-30157121,30157122-30157199,30157549-30157950,
30158018-30158092,30158182-30158337,30158467-30158658,
30158717-30158723,30160381-30160433
Length = 324
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/51 (25%), Positives = 30/51 (58%)
Frame = -3
Query: 154 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEI 2
E++ +++P D G S +++ +++ P+S VV+ +Y+S + A +I
Sbjct: 109 EMLPSGFLIRPSDG-GGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQKI 158
>06_03_1427 -
30090464-30090475,30090476-30090553,30090903-30091304,
30091372-30091446,30091536-30091691,30091821-30092012,
30093735-30093908,30094966-30095123,30096738-30096914,
30096996-30097035
Length = 487
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/51 (25%), Positives = 30/51 (58%)
Frame = -3
Query: 154 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEI 2
E++ +++P D G S +++ +++ P+S VV+ +Y+S + A +I
Sbjct: 272 EMLPSGFLIRPSDG-GGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQKI 321
>06_03_1422 +
30058936-30058975,30059057-30059233,30060848-30061005,
30062063-30062236,30063959-30064150,30064280-30064435,
30064525-30064599,30064667-30065068,30065418-30065495,
30065840-30066173,30066275-30066339
Length = 616
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/51 (25%), Positives = 30/51 (58%)
Frame = -3
Query: 154 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEI 2
E++ +++P D G S +++ +++ P+S VV+ +Y+S + A +I
Sbjct: 272 EMLPSGFLIRPSDG-GGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQKI 321
>01_06_1106 + 34563368-34563679
Length = 103
Score = 27.1 bits (57), Expect = 5.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 312 DKLLENKVQAPARPGAIAPCQSSFPP 235
D+L QAP RPG + P S+ PP
Sbjct: 22 DRLGAASSQAPPRPGRVPPSASAPPP 47
>08_01_0746 - 6959210-6959344,6959467-6959776,6960102-6960589
Length = 310
Score = 26.6 bits (56), Expect = 6.6
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 190 EPGRKRSSLDRGRCCGRE*RLTW 258
EPG SLDR RCCGR + W
Sbjct: 282 EPG----SLDRSRCCGRGGQSGW 300
>02_04_0165 - 20489756-20489854,20489930-20490160
Length = 109
Score = 26.6 bits (56), Expect = 6.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 192 AWKKEVFSGPRPVLWAGMTTDMGQWHQDELELG 290
AWK+E P V WA ++ + Q H++ +G
Sbjct: 32 AWKREPSPCPDDVHWALLSPEQRQLHEEMAAMG 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,439,187
Number of Sequences: 37544
Number of extensions: 234769
Number of successful extensions: 682
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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