Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40020
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   4.5  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         26   5.9  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    26   7.8  

>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -1

Query: 471 MEDPFLTKNLSLIDQKSS 418
           + DP+L KNLS+I +KSS
Sbjct: 754 LPDPWLHKNLSVIQEKSS 771


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 82  LPSVWSLPWQRWPL 41
           +P  W  PWQ WP+
Sbjct: 469 IPLDWDRPWQAWPI 482


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1315

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 521  YYLKRFNLSVILRG--NLLLLVNTIYYLYVSAQRGIIFVKL 637
            +++K F L+   +   N L+    IYYL  ++ +  IF+ +
Sbjct: 1240 FFMKLFQLTPTSKSFQNFLIFAGVIYYLLAASGQNYIFISM 1280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,187,106
Number of Sequences: 5004
Number of extensions: 62124
Number of successful extensions: 131
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)