Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40020
         (852 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45045| Best HMM Match : Kinesin (HMM E-Value=0)                     32   0.68 
SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38)                30   2.7  

>SB_45045| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 1260

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = +3

Query: 24  LINIPRSGQRCHGRLQTLGRTEASDFSSSEDHLSMISYVR 143
           L+  PRS +RCH   +    TE SDF  SE  LS+ S +R
Sbjct: 303 LLRDPRSRRRCHSDYE----TEDSDFMESESELSIDSLLR 338


>SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38)
          Length = 641

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/52 (32%), Positives = 31/52 (59%)
 Frame = +3

Query: 267 MICVKALLGSS*SIYVNYHIIIVNKEIVIL*KHNDSILNYILEQHNVKKKQN 422
           MI V  +  SS S+ ++  +II+   I I   ++  I+N ++ QH+ +K+QN
Sbjct: 526 MILVPVITPSSSSLALSSTVIIIITIITISIINSMIIINIVINQHHHQKQQN 577


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,568,910
Number of Sequences: 59808
Number of extensions: 418628
Number of successful extensions: 666
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)