Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40020
         (852 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25090.1 68417.m03604 respiratory burst oxidase, putative / N...    28   9.1  

>At4g25090.1 68417.m03604 respiratory burst oxidase, putative /
           NADPH oxidase, putative similar to respiratory burst
           oxidase protein A from Arabidopsis thaliana, gb:AF055353
           [gi:3242781], protein D [gi:3242789]; contains Pfam
           profile PF01794 Ferric reductase like transmembrane
           component
          Length = 849

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 752 LASINPQWFXNHLFFLAKSFVFVFTYNIYI 663
           LAS N  W+ +HLF +    + +  Y IY+
Sbjct: 481 LASFNAFWYTHHLFVIVYILLVLHGYYIYL 510


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,065,036
Number of Sequences: 28952
Number of extensions: 304430
Number of successful extensions: 587
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)