Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40019
         (842 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   208   5e-56
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   208   5e-56
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.5  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   4.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   8.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   8.1  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  208 bits (508), Expect = 5e-56
 Identities = 94/113 (83%), Positives = 103/113 (91%)
 Frame = +2

Query: 2   IYRASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRA 181
           IYRA+YFGFYDTARGMLPDPK TP +ISW IAQ VTTVAGI+SYPFDTVRRRMMMQSGRA
Sbjct: 188 IYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRA 247

Query: 182 KSDILYKNTIHCWATIAKTEGTSGLFKGAFSNVLRGTGGAFVLVLYDEIKKVL 340
           KS+ILYK+T+HCWATI KTEG +  FKGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 248 KSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300



 Score = 32.7 bits (71), Expect = 0.004
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 131 YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSGLFKG 265
           YP D  R R+    G+A  +  +    +C   I K +G +GL++G
Sbjct: 134 YPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRG 178



 Score = 29.9 bits (64), Expect = 0.031
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +2

Query: 89  AIAQTVTTVAGIISYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTSGLFK 262
           A A + TTVA     P + V+  + +Q  S +   +  YK  I C+  I K +G    ++
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 263 GAFSNVLR 286
           G  +NV+R
Sbjct: 75  GNLANVIR 82


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  208 bits (508), Expect = 5e-56
 Identities = 94/113 (83%), Positives = 103/113 (91%)
 Frame = +2

Query: 2   IYRASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRA 181
           IYRA+YFGFYDTARGMLPDPK TP +ISW IAQ VTTVAGI+SYPFDTVRRRMMMQSGRA
Sbjct: 188 IYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRA 247

Query: 182 KSDILYKNTIHCWATIAKTEGTSGLFKGAFSNVLRGTGGAFVLVLYDEIKKVL 340
           KS+ILYK+T+HCWATI KTEG +  FKGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 248 KSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300



 Score = 32.7 bits (71), Expect = 0.004
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 131 YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSGLFKG 265
           YP D  R R+    G+A  +  +    +C   I K +G +GL++G
Sbjct: 134 YPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRG 178



 Score = 29.9 bits (64), Expect = 0.031
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +2

Query: 89  AIAQTVTTVAGIISYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTSGLFK 262
           A A + TTVA     P + V+  + +Q  S +   +  YK  I C+  I K +G    ++
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 263 GAFSNVLR 286
           G  +NV+R
Sbjct: 75  GNLANVIR 82


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = +3

Query: 501 VLQIACPN*SDILPL*KFSNFDISIAFILYN 593
           +L+++ P   D+  + K+S     ++F+L+N
Sbjct: 450 ILRVSMPKIKDVNIIDKYSRIIFPVSFMLFN 480


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 330 LISSYKTSTKAPPVPLRTLEKAPL 259
           L++++KT T+ P    + LEK P+
Sbjct: 134 LVNAFKTLTQEPKNTNKFLEKGPV 157


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 379 DSVSQPLPSDHVLLDTKTTLVTYF*LNKVLYNDSIIYCFI-KCYKLL 516
           D+V+Q   S  + L     L +Y   N  +Y D++I C +  C  +L
Sbjct: 282 DAVTQIFFSYALGLGALVALGSYNKFNNNVYKDALIVCTVNSCTSML 328


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 379 DSVSQPLPSDHVLLDTKTTLVTYF*LNKVLYNDSIIYCFI-KCYKLL 516
           D+V+Q   S  + L     L +Y   N  +Y D++I C +  C  +L
Sbjct: 335 DAVTQIFFSYALGLGALVALGSYNKFNNNVYKDALIVCTVNSCTSML 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,368
Number of Sequences: 438
Number of extensions: 4235
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)