Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40016
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    29   0.56 
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    27   3.0  
SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyce...    27   3.0  
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    27   3.9  
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ...    27   3.9  
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    26   5.2  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   9.1  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    25   9.1  

>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 320  RPLARRPAISMSTRHPRQNAIVQTL 394
            R L   PA+ ++ +HP++NAIV+ L
Sbjct: 1664 RKLCNHPALILTEKHPKRNAIVKQL 1688


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 9/86 (10%)
 Frame = +3

Query: 300 RREFWARDLLPDDLQSL--CPHGTRAKMQLYRHXNLGKVPGSVLMGRANHTELDAFSNLM 473
           RR  W  DL    L+ +     G    + L +H N+     +V +G  +  +      L 
Sbjct: 53  RRPAWISDLDNSSLEVVRHLGEGNGGAVSLVKHRNIFMARKTVYVGSDSKLQKQILRELG 112

Query: 474 V-------YALQFYGAVTSMNSVSAC 530
           V       Y + FYGA    N++S C
Sbjct: 113 VLHHCRSPYIVGFYGAFQYKNNISLC 138


>SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 138

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 44  RGPRSSRVLDQVLRTRSVE 100
           RGP+++RVL ++LR R  E
Sbjct: 76  RGPKAARVLSEILRNRITE 94


>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 172 DVVGATRASSTSVTWARCGAWW-RGAGTWPSSATP 273
           D+ GAT   + ++   R  AWW + A T P+S  P
Sbjct: 310 DLHGATVREAKTIVRERVAAWWAKEADTSPNSIRP 344


>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 539

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
 Frame = +1

Query: 79  PAHPER*ALNTWTRAAC--LTTTSXT*VMVPLSDVVGATRASSTSVTWARCGAWWRGAGT 252
           P+HP +  LN +   A   + TTS   +   +     AT ASS        G        
Sbjct: 200 PSHPLQELLNAYQALAKGQVATTSPQQIPNQIQQASAATTASSKMTVDTNLGTAQPSLYN 259

Query: 253 WPSSATPXPQRCPPDDAASSGRATSCPTTCN 345
            PSS      +  P D+ +S  + + P + N
Sbjct: 260 TPSSDYELANQEKPADSMASAASLNTPLSSN 290


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +3

Query: 378 QLYRHXNLGKVPGSVLMGRANHTELDAFSNLMVYALQFYGAVTSMNSVSACSTLSLI 548
           QLYR  +LG +   VL+G A H    A   +     +    +T+++SVS    + L+
Sbjct: 235 QLYRSASLGIISDYVLLGEACHKSEIASQRMNELKRRRDIIITALDSVSNSQEVLLL 291


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = +3

Query: 3    YLLSNGWIRP--YGCNGAHAAAEYWTKSCAPGALSSEYVDSGSLPY 134
            Y   +GW +   YG  G H   +YW++       SS Y+    L Y
Sbjct: 902  YCNLSGWSQSSRYGWKGHHIMVQYWSELTG----SSNYMQESDLEY 943


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 262 TKATSPPPSTMHRTAPT 212
           + A+ PPPS++H+  PT
Sbjct: 463 SNASVPPPSSLHKNPPT 479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,023,733
Number of Sequences: 5004
Number of extensions: 59442
Number of successful extensions: 177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)