Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40016
         (774 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U46674-5|AAA85757.1|  708|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AC024756-5|AAK29880.3|  414|Caenorhabditis elegans Hypothetical ...    30   2.1  
Z68760-4|CAE17822.1|  160|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical pr...    29   3.7  
M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.ele...    29   3.7  
AF036700-1|AAB88364.1|  258|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z82280-3|CAB05265.1|  387|Caenorhabditis elegans Hypothetical pr...    29   4.9  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    29   4.9  
Z69792-1|CAB61002.1|  605|Caenorhabditis elegans Hypothetical pr...    28   6.4  
D85744-1|BAA12861.1|  605|Caenorhabditis elegans HCH-1 protein.        28   6.4  
AL132904-17|CAC35850.1|  240|Caenorhabditis elegans Hypothetical...    28   8.5  

>AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical
           protein F54A3.1 protein.
          Length = 425

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 25/61 (40%), Positives = 28/61 (45%)
 Frame = +1

Query: 193 ASSTSVTWARCGAWWRGAGTWPSSATPXPQRCPPDDAASSGRATSCPTTCNLYVHTAPAP 372
           ASSTS       A   GA   PSSA   P+R PP  AA + RA S           AP+P
Sbjct: 218 ASSTSAPPKTTAA---GAPKRPSSAVA-PRRAPPASAAPTRRAPSPKAPVVAPTRRAPSP 273

Query: 373 K 375
           K
Sbjct: 274 K 274


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
           protein W01F3.3 protein.
          Length = 2175

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 5/137 (3%)
 Frame = +1

Query: 16  TDGSGRTV--ATGPTQQPSTGPSPAHPER*ALNTWTRAACLTTTSXT*VMVPLSDVVGAT 189
           +DGS ++V   T  T+ P+T  S    E     T T +  +TTT  T      ++ V  T
Sbjct: 225 SDGSQQSVESTTTTTESPTTEASTTTTEA---PTTTTSEEVTTTEITTEAPTTTEEVTTT 281

Query: 190 RAS---STSVTWARCGAWWRGAGTWPSSATPXPQRCPPDDAASSGRATSCPTTCNLYVHT 360
             +    T+ T  R         T  ++A P   R        +   T  PTT  +   T
Sbjct: 282 ETTIEAQTTTTTERMSPSTTKTST-TTTAKPTTTRSTTTQRPQTVATTEAPTTTTVEDVT 340

Query: 361 APAPKCNCTDTXTSARS 411
             AP+  C     SA S
Sbjct: 341 TRAPRTECERRRASASS 357


>U46674-5|AAA85757.1|  708|Caenorhabditis elegans Hypothetical
           protein T26A8.1 protein.
          Length = 708

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 9/108 (8%)
 Frame = +1

Query: 64  STGPSPAHPER*ALNTWTRAACLTTTSXT*VMVPLSDVVGATRASSTSVTWARCGAWWRG 243
           STG +       +  T +     TTT+ T    P + V+  T  S+TS   A      R 
Sbjct: 322 STGSTVETTPSTSTTTTSSTTSTTTTTTTTTETPSTTVITTTIPSTTSEPEATIDVKTRD 381

Query: 244 A-----GTWPSSAT----PXPQRCPPDDAASSGRATSCPTTCNLYVHT 360
           +     G  P+S+     P P+ CP D     G   +   T + ++ T
Sbjct: 382 SKEDTNGVLPTSSAIETPPYPENCPEDSLFLPGTIAASEETSSSFIKT 429


>AC024756-5|AAK29880.3|  414|Caenorhabditis elegans Hypothetical
           protein Y34D9A.7 protein.
          Length = 414

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +2

Query: 401 RQGPRIGPDGAGE-SYRTRRFFEFNGIRSTILRGCHFDEFSFSMFYSQPHYSDLIFSDVA 577
           R+   +GPD   E  YR RR   + G     LR     EF+    YS+ H  + + +D  
Sbjct: 151 RKALSLGPDDIPEWVYRMRRLGFYRGYPPGYLRKSLKREFATLKIYSEDHNQEEVDNDDD 210

Query: 578 VRLKPLP 598
              +P P
Sbjct: 211 EEARPAP 217


>Z68760-4|CAE17822.1|  160|Caenorhabditis elegans Hypothetical
           protein F36H1.9 protein.
          Length = 160

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
 Frame = +3

Query: 450 LDAFSNLMVYALQFYG----AVTSMNSVSACSTLSLII 551
           L  FSN++ YA+QF+      +T+M ++ AC TL + +
Sbjct: 29  LIGFSNILSYAIQFHNWSALTLTAMVTLVACHTLQMFL 66


>Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical protein
            F02A9.6 protein.
          Length = 1295

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = -3

Query: 355  GHRDCRSSGKRSRAQNSRRRPADTSAGMVWRTKATSPPPSTMHRTAPT*PKYCSLASRRQ 176
            G +  R + K  +   SR+ P  TSA     T   +PPPS    ++P+   Y +  S   
Sbjct: 1183 GAKSGRQTVKNIKRAGSRKTP--TSAASSRETNHLTPPPSDGSFSSPSPHYYPTTTSTPN 1240

Query: 175  RLKEAP 158
            R++ +P
Sbjct: 1241 RMETSP 1246


>Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical protein
            F02A9.6 protein.
          Length = 1295

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = -3

Query: 355  GHRDCRSSGKRSRAQNSRRRPADTSAGMVWRTKATSPPPSTMHRTAPT*PKYCSLASRRQ 176
            G +  R + K  +   SR+ P  TSA     T   +PPPS    ++P+   Y +  S   
Sbjct: 1183 GAKSGRQTVKNIKRAGSRKTP--TSAASSRETNHLTPPPSDGSFSSPSPHYYPTTTSTPN 1240

Query: 175  RLKEAP 158
            R++ +P
Sbjct: 1241 RMETSP 1246


>M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.elegans
            glp-1 gene,complete cds. ).
          Length = 1295

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = -3

Query: 355  GHRDCRSSGKRSRAQNSRRRPADTSAGMVWRTKATSPPPSTMHRTAPT*PKYCSLASRRQ 176
            G +  R + K  +   SR+ P  TSA     T   +PPPS    ++P+   Y +  S   
Sbjct: 1183 GAKSGRQTVKNIKRAGSRKTP--TSAASSRETNHLTPPPSDGSFSSPSPHYYPTTTSTPN 1240

Query: 175  RLKEAP 158
            R++ +P
Sbjct: 1241 RMETSP 1246


>AF036700-1|AAB88364.1|  258|Caenorhabditis elegans Hypothetical
           protein M04G7.1 protein.
          Length = 258

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 325 SCPTTCNLYVHTAP-APKCNCTDTXTSARSQDRS 423
           +C  TCN+   TAP +P+  CTD  T   ++  S
Sbjct: 132 NCARTCNMCYSTAPVSPQYACTDLLTDCANRTAS 165


>Z82280-3|CAB05265.1|  387|Caenorhabditis elegans Hypothetical
           protein R05A10.3 protein.
          Length = 387

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 66  YWTKSCAPGALSSEYVDSGSLPYDNLXHLSHGASFRR 176
           YWTKS       S+ +D  S  Y+ L H+      RR
Sbjct: 214 YWTKSTPKDFTISQKIDQSSPGYNQLLHMLEDLKHRR 250


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
            protein T19D12.1 protein.
          Length = 1844

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 35/138 (25%), Positives = 53/138 (38%), Gaps = 5/138 (3%)
 Frame = +1

Query: 37   VATGPTQQPSTGPSPAHPER*ALNTWTRAACLTTTSXT*VMVPLSDVVGATRASSTSVTW 216
            +A+  T   + G S   P   + +  +     ++ S T V    S  VGAT+ S +S T 
Sbjct: 1493 IASSSTMGSTAGSSSPQPTVSSTSVPSSTGATSSGSSTTVG---SSTVGATQTSVSSSTV 1549

Query: 217  ARCGAWWRGAGTWPS-----SATPXPQRCPPDDAASSGRATSCPTTCNLYVHTAPAPKCN 381
               G+      T PS     S +   Q  P   AA++G +TS PT       ++     N
Sbjct: 1550 PNTGSTGSTV-TNPSTSSSTSGSSSTQSIPSSTAANTGSSTSGPTVATTQGSSSTQTNSN 1608

Query: 382  CTDTXTSARSQDRS*WGG 435
               T  +      S  GG
Sbjct: 1609 TGSTTVATTVTQGSSTGG 1626


>Z69792-1|CAB61002.1|  605|Caenorhabditis elegans Hypothetical
           protein F40E10.1 protein.
          Length = 605

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 22/73 (30%), Positives = 31/73 (42%)
 Frame = +1

Query: 34  TVATGPTQQPSTGPSPAHPER*ALNTWTRAACLTTTSXT*VMVPLSDVVGATRASSTSVT 213
           T +T  T  P T P+ +        T T A   TTT+ T    P +     T ++S   +
Sbjct: 480 TTSTTTTTAPITVPTVSPTTTTTRQTTTTARTSTTTTTT--QAPPT----TTTSTSQCAS 533

Query: 214 WARCGAWWRGAGT 252
           W+ C A   G GT
Sbjct: 534 WSACSAQCGGCGT 546


>D85744-1|BAA12861.1|  605|Caenorhabditis elegans HCH-1 protein.
          Length = 605

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 22/73 (30%), Positives = 31/73 (42%)
 Frame = +1

Query: 34  TVATGPTQQPSTGPSPAHPER*ALNTWTRAACLTTTSXT*VMVPLSDVVGATRASSTSVT 213
           T +T  T  P T P+ +        T T A   TTT+ T    P +     T ++S   +
Sbjct: 480 TTSTTTTTAPITVPTVSPTTTTTRQTTTTARTSTTTTTT--QAPPT----TTTSTSQCAS 533

Query: 214 WARCGAWWRGAGT 252
           W+ C A   G GT
Sbjct: 534 WSACSAQCGGCGT 546


>AL132904-17|CAC35850.1|  240|Caenorhabditis elegans Hypothetical
           protein Y111B2A.21 protein.
          Length = 240

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +1

Query: 31  RTVATGPTQQP-STGPSPAHPER*ALNTWTRA 123
           R   TGP  +P    PSP  P + +  TWT A
Sbjct: 60  RNDETGPRSEPVDVKPSPKRPTKRSAETWTTA 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,497,550
Number of Sequences: 27780
Number of extensions: 367416
Number of successful extensions: 1375
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1371
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)