Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40016
         (774 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09030.1 68417.m01490 arabinogalactan-protein (AGP10) identic...    29   2.6  
At1g28200.1 68414.m03461 GRAM domain-containing protein / ABA-re...    29   2.6  
At2g43160.3 68415.m05361 epsin N-terminal homology (ENTH) domain...    29   4.5  
At2g43160.2 68415.m05360 epsin N-terminal homology (ENTH) domain...    29   4.5  
At2g43160.1 68415.m05359 epsin N-terminal homology (ENTH) domain...    29   4.5  
At1g61480.1 68414.m06927 S-locus protein kinase, putative simila...    29   4.5  

>At4g09030.1 68417.m01490 arabinogalactan-protein (AGP10) identical
           to gi|10880497|gb|AAG24278; supported by Ceres cDNA
           265772
          Length = 127

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 25/70 (35%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
 Frame = +1

Query: 1   LICCLTDGSGRTVATGPTQQPSTGPSPAHPER*ALNTWTRAACLT-TTSXT*VMVPLSDV 177
           L   L   S    A GP    S  PSPA P R A  T +     T T S T    P+S  
Sbjct: 10  LFLALIASSAIAQAPGPAPTRSPLPSPAQPPRTAAPTPSITPTPTPTPSATPTAAPVSPP 69

Query: 178 VGATRASSTS 207
            G+   SS S
Sbjct: 70  AGSPLPSSAS 79


>At1g28200.1 68414.m03461 GRAM domain-containing protein /
           ABA-responsive protein-related similar to ABA-responsive
           protein [Hordeum vulgare] GI:4103635; contains Pfam
           profile PF02893: GRAM domain
          Length = 259

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 256 PSSATPXPQRCPPDDAASSGRATSCPTTCNLYVHTAPAPK 375
           P+  TP P +  P  AA    AT+ P   N YV  +PAP+
Sbjct: 40  PTDVTPPPPQPIPTGAA----ATTMPAESNPYVSPSPAPR 75


>At2g43160.3 68415.m05361 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain; similar
           to Af10-protein (GI:1724114) [Avena fatua]
          Length = 895

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 250 TWPSSATPXPQRCPPDDAASSGRATSCPTTCNLYVHTAPAPKCNCTD 390
           T P +A+P P +    +AAS    T+   T   +V+ +P+ K    D
Sbjct: 316 TAPGAASPPPPQVAAPEAASPPTGTNTANTTATFVNESPSQKVETFD 362


>At2g43160.2 68415.m05360 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain; similar
           to Af10-protein (GI:1724114) [Avena fatua]
          Length = 895

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 250 TWPSSATPXPQRCPPDDAASSGRATSCPTTCNLYVHTAPAPKCNCTD 390
           T P +A+P P +    +AAS    T+   T   +V+ +P+ K    D
Sbjct: 316 TAPGAASPPPPQVAAPEAASPPTGTNTANTTATFVNESPSQKVETFD 362


>At2g43160.1 68415.m05359 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain; similar
           to Af10-protein (GI:1724114) [Avena fatua]
          Length = 895

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 250 TWPSSATPXPQRCPPDDAASSGRATSCPTTCNLYVHTAPAPKCNCTD 390
           T P +A+P P +    +AAS    T+   T   +V+ +P+ K    D
Sbjct: 316 TAPGAASPPPPQVAAPEAASPPTGTNTANTTATFVNESPSQKVETFD 362


>At1g61480.1 68414.m06927 S-locus protein kinase, putative similar
           to receptor protein kinase (IRK1) GI:836953 from
           [Ipomoea trifida]; contains S-locus glycoprotein family
           domain, Pfam:PF00954
          Length = 809

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 261 VRHTXPAEVSAGRRREFWARDLLPDDLQSL 350
           V+HT  A++S    +E W  DL P D+  L
Sbjct: 452 VKHTVSAKISKIASKEAWNNDLEPQDVSGL 481


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,566,807
Number of Sequences: 28952
Number of extensions: 342867
Number of successful extensions: 1057
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)