Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40015
         (826 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28100.1 68416.m03507 nodulin MtN21 family protein similar to...    32   0.40 
At5g27450.2 68418.m03277 mevalonate kinase (MK) identical to mev...    29   3.7  
At5g27450.1 68418.m03276 mevalonate kinase (MK) identical to mev...    29   3.7  

>At3g28100.1 68416.m03507 nodulin MtN21 family protein similar to
           MtN21 [Medicago truncatula] GI:2598575
          Length = 353

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
 Frame = -3

Query: 332 GLLNLLQGVAFECAY-GFHFS--TVSAVLSNSSPGLNFI-SVVLKVEEVT-KLYSSPSLR 168
           GLL LL  +     Y G  +S  T+++ +SN +P L FI +++ ++E+V+ K  SS +  
Sbjct: 82  GLLGLLGSMYVITGYIGIEYSSPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKV 141

Query: 167 SSTVGVTALAALRVIRPTPMVFMNSS 90
             T+     A + V+   P VF+ SS
Sbjct: 142 MGTILSLIGALVVVLYHGPRVFVASS 167


>At5g27450.2 68418.m03277 mevalonate kinase (MK) identical to
           mevalonate kinase [Arabidopsis thaliana]
           SWISS-PROT:P46086
          Length = 378

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 573 HQSSSTVRIAKASCGDETKISLATTVTTGRALVREVXICNSKNTFHWL 716
           + SS+  R   ASC +ET  S+A  V        ++ + +  +TF WL
Sbjct: 75  YDSSTLCRSTPASCSEETLKSIAVLVEEQNLPKEKMWLSSGISTFLWL 122


>At5g27450.1 68418.m03276 mevalonate kinase (MK) identical to
           mevalonate kinase [Arabidopsis thaliana]
           SWISS-PROT:P46086
          Length = 378

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 573 HQSSSTVRIAKASCGDETKISLATTVTTGRALVREVXICNSKNTFHWL 716
           + SS+  R   ASC +ET  S+A  V        ++ + +  +TF WL
Sbjct: 75  YDSSTLCRSTPASCSEETLKSIAVLVEEQNLPKEKMWLSSGISTFLWL 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,800,079
Number of Sequences: 28952
Number of extensions: 329830
Number of successful extensions: 792
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1892353600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)