Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40014
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    29   1.1  
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           28   1.9  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    26   5.9  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    26   7.8  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    26   7.8  

>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
 Frame = +2

Query: 77  SDELKG--DIQEGLQFCQKFSQCVPEEKRDIVARPQE 181
           S E KG  DI+EG+Q+ +K S+ +   K+ I+AR Q+
Sbjct: 3   SFENKGFLDIEEGIQWIKKNSENLSSSKKTILARLQQ 39


>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +2

Query: 200 FFRCYKHKKLEACIMKD--IMNTSPRNTLSTTRRPISLTPVQDALLATSPSEIRASKPWR 373
           ++  Y+++K    +M++  ++ +    T   ++ P  LTP    + +TS S + A KP  
Sbjct: 193 YYPSYQNRKDGKSLMENRGVVLSVDTVTSPISQSPKKLTPTTSPINSTSLSFVDAKKPGS 252

Query: 374 KW 379
           KW
Sbjct: 253 KW 254


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 298 DFAYSRSGRSARDLPLRDPSLEALEEMEVYLYDYLSGGGAFDF 426
           D A  R+GR  R++ L  PS +A E++   +   L   G FDF
Sbjct: 328 DSALRRAGRFDREICLTVPSQDAREKILRTMAKGLKLSGDFDF 370


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 510 ESRKASNSRRHGALSCSRVSCEPIAKSNINFTKKNNRKKLALAI 641
           ES  A++SRR+   S S + CEP    + +F     R  +  AI
Sbjct: 298 ESVSANSSRRNSHDSNSTIICEPEYPPDTSFNSSPGRLWIVTAI 341


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 675 IVTRKQIIIVLISVLIMCIRGGRVILSSVHIRLLNPD 785
           IV   ++  +  + LI+CI  GR++ +  H  L+  D
Sbjct: 773 IVIAHRLSTITNADLILCISNGRIVETGTHEELIKRD 809


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,011,298
Number of Sequences: 5004
Number of extensions: 56294
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)