Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40014
         (853 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0468 - 17505905-17506002,17506295-17506424,17506662-175067...    31   1.5  
11_01_0354 + 2665570-2665601,2665796-2665894,2667158-2667202,266...    29   3.6  
02_01_0721 - 5373449-5373603,5373912-5373981,5374473-5374620,537...    29   6.2  
09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412...    28   8.2  
05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006,316...    28   8.2  
03_02_0895 + 12230683-12230844,12230937-12230991,12231106-122311...    28   8.2  

>08_02_0468 -
           17505905-17506002,17506295-17506424,17506662-17506778,
           17506881-17506959,17507546-17507654,17507857-17507969,
           17510510-17510570,17511562-17511742,17512903-17512960,
           17514292-17514497,17514582-17514671,17514752-17514813,
           17514911-17514979,17515330-17515334,17516282-17516454
          Length = 516

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = +2

Query: 170 RPQEQIRSIFFFRCYKHKKLEACIMKDIMNTSPRNTLSTTRRPI 301
           +P+ ++ +  F   Y  + L   I+++IMN++P N++   RRP+
Sbjct: 172 KPRYELTAALFHYSYSLQSLYESILQEIMNSAPSNSIQ--RRPV 213


>11_01_0354 +
           2665570-2665601,2665796-2665894,2667158-2667202,
           2667293-2667356,2667497-2667709,2669960-2670160
          Length = 217

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +2

Query: 17  DDNMEPNFEHIRARIGSLPVSDELKGDIQEGLQFCQKFSQCVPEEKRDIVARPQEQ 184
           + N+E   EH+RA  G L ++  +K    +G  F   F + V  E+ +  A  + Q
Sbjct: 98  EPNIEQRLEHLRANSGQL-IAFYIKNFADKGTAFFMDFLRYVVSERPEAAANSEPQ 152


>02_01_0721 -
           5373449-5373603,5373912-5373981,5374473-5374620,
           5374755-5374870,5374955-5375033,5375163-5375233,
           5376201-5376344,5376439-5376592,5376906-5376941,
           5377145-5377226,5377315-5377408,5377993-5378062,
           5378177-5378274,5378745-5378827,5379335-5379428,
           5379533-5380036
          Length = 665

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 599 INVRFCDRLTGNPTAG 552
           IN+RF DR TG PT G
Sbjct: 251 INIRFLDRRTGEPTVG 266


>09_06_0016 -
           20240358-20240797,20241040-20241131,20241132-20241250,
           20241398-20241561,20241664-20241757,20242048-20242080,
           20242361-20242478,20242712-20242812,20242882-20242962,
           20243138-20243335,20243411-20243545,20243662-20243667,
           20243727-20243805,20243845-20243896,20244328-20244388,
           20244475-20244532,20245137-20245225,20246305-20246799
          Length = 804

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 316 SGRSARDLPLRDPSLEALEEMEVY-LYD 396
           +G  A ++P+RDP +  + + EVY LYD
Sbjct: 133 NGTEAGEMPIRDPLIITINKSEVYALYD 160


>05_01_0400 -
           3159370-3159385,3159599-3159703,3159972-3160006,
           3160134-3160272,3160457-3160605,3161052-3161173,
           3161296-3161417,3161779-3162033,3162108-3162271,
           3162311-3162489,3162593-3162767,3162916-3163002,
           3163144-3163446,3163539-3163594,3163813-3163894,
           3163972-3164039,3164779-3164835,3164926-3164991,
           3165121-3165192,3167363-3167459
          Length = 782

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 540 VVGNCSPFATQKQLS-YLSVTLVLRCRG 460
           VVGNC+ FA  +  S Y S+ L+L  RG
Sbjct: 506 VVGNCTGFAVNRMFSPYTSIALLLVDRG 533


>03_02_0895 +
           12230683-12230844,12230937-12230991,12231106-12231169,
           12231292-12231334,12231509-12231607,12231710-12231778,
           12231912-12232245,12232317-12232471,12232592-12233287
          Length = 558

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 274 IPWRSVHDVLHDARLQFLVLVASEEENRSDLFLW 173
           IP+R    +LH A+  FL L +++  + S+L  W
Sbjct: 160 IPYREAMSLLHQAKQVFLSLKSNQMYSESELAAW 193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,696,004
Number of Sequences: 37544
Number of extensions: 372532
Number of successful extensions: 884
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)