Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40014
         (853 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40034| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_57109| Best HMM Match : DUF1280 (HMM E-Value=7.4)                   29   6.3  
SB_37154| Best HMM Match : WD40 (HMM E-Value=7.00649e-45)              29   6.3  
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  

>SB_40034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +2

Query: 71  PVSDELKGDIQEGLQFCQKFSQC--VPEEKRDIVARPQEQIRSIFFFRCYKHKKLEACIM 244
           P  D+LK  +   L FCQKFS C  + +     + RP E +     +  YKH        
Sbjct: 213 PDRDQLK--LTMPLSFCQKFSSCSVIIDCFEVFIDRPSELLARAQTWSSYKHHN----TA 266

Query: 245 KDIMNTSPRNTLS 283
           K ++  +P+ T+S
Sbjct: 267 KFLIGITPQGTVS 279


>SB_57109| Best HMM Match : DUF1280 (HMM E-Value=7.4)
          Length = 605

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = -2

Query: 849 QFGIKKTNSLKNYQREMKIK-FNQDLIIEYVQNS 751
           +FG+KK+ S  NY R+ K+K F+Q+L   +V+ S
Sbjct: 98  KFGVKKSRSF-NYLRKRKLKQFDQELDSVFVEES 130


>SB_37154| Best HMM Match : WD40 (HMM E-Value=7.00649e-45)
          Length = 870

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = -2

Query: 849 QFGIKKTNSLKNYQREMKIK-FNQDLIIEYVQNS 751
           +FG+KK+ S  NY R+ K+K F+Q+L   +V+ S
Sbjct: 98  KFGVKKSRSF-NYLRKRKLKQFDQELDSVFVEES 130


>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2749

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +2

Query: 245  KDIMNTSPRNTLSTTRRPISLTPVQDALLATSP--SEIRASKPWRKWRCTCMTILAEGAP 418
            KD +  SP  +++++ R I    +     +  P  SE+R   P  + R + +  L  G P
Sbjct: 2203 KDFLRLSPVASVASSPRVIRSLSLSSRGTSPEPAVSEVRRPPPPMRRRSSSLPYLLPGGP 2262

Query: 419  SILTSTS 439
             I T TS
Sbjct: 2263 HISTQTS 2269


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,319,963
Number of Sequences: 59808
Number of extensions: 413766
Number of successful extensions: 1266
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1265
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)