Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40014
(853 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024882-5|AAF60932.1| 666|Caenorhabditis elegans Hypothetical ... 30 2.4
AF043701-7|AAK18972.1| 498|Caenorhabditis elegans Hypothetical ... 29 3.2
AL117204-21|CAB55157.1| 712|Caenorhabditis elegans Hypothetical... 29 4.2
U41274-4|AAA82460.1| 297|Caenorhabditis elegans Hypothetical pr... 29 5.5
AF003151-4|AAK18918.2| 142|Caenorhabditis elegans Hypothetical ... 28 7.3
AF003151-3|ABJ99067.1| 247|Caenorhabditis elegans Hypothetical ... 28 7.3
U41038-2|AAX88827.1| 635|Caenorhabditis elegans Serotonin/octop... 28 9.7
U41038-1|AAK29709.2| 683|Caenorhabditis elegans Serotonin/octop... 28 9.7
U13876-11|AAN63395.1| 201|Caenorhabditis elegans Coenzyme q (ub... 28 9.7
U13876-10|AAN63394.1| 216|Caenorhabditis elegans Coenzyme q (ub... 28 9.7
U13876-9|AAW88395.1| 356|Caenorhabditis elegans Coenzyme q (ubi... 28 9.7
U13876-8|AAN63396.1| 370|Caenorhabditis elegans Coenzyme q (ubi... 28 9.7
U13876-7|AAW88396.1| 427|Caenorhabditis elegans Coenzyme q (ubi... 28 9.7
AF031415-1|AAC15778.1| 635|Caenorhabditis elegans serotonin rec... 28 9.7
AF031414-1|AAC15827.1| 683|Caenorhabditis elegans serotonin rec... 28 9.7
>AC024882-5|AAF60932.1| 666|Caenorhabditis elegans Hypothetical
protein Y9C9A.8 protein.
Length = 666
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 778 ILIKFNFHFTLVIFKGIRFFD 840
ILI NFHF L+ K ++FF+
Sbjct: 107 ILISINFHFLLLTLKNVKFFN 127
>AF043701-7|AAK18972.1| 498|Caenorhabditis elegans Hypothetical
protein K12C11.1 protein.
Length = 498
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +2
Query: 236 CIMKDIMNTSPRNTLSTTRRPISLTPVQDALLATSPSEIRASKPWRKWRCTCMTILAE 409
C DI + P N T ++ I V +A+LA + + ++A+KP +W T M IL+E
Sbjct: 280 CYASDITTSFPSNGKFTEKQKI----VYNAVLAANLAVLKAAKPGVRW--TDMHILSE 331
>AL117204-21|CAB55157.1| 712|Caenorhabditis elegans Hypothetical
protein Y116A8C.33 protein.
Length = 712
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 2 ELGYVDDN--MEPNFEHIRARIGSLPVSDELKGDIQEGLQFCQKFSQCVPEEK 154
EL + N + FEH++ + S+P+ E D+ + L+ C + V +K
Sbjct: 335 ELAAISGNSLISDGFEHLKNLLSSVPLDIENSADVLKKLEACYRLHPAVSPDK 387
>U41274-4|AAA82460.1| 297|Caenorhabditis elegans Hypothetical
protein T04G9.4 protein.
Length = 297
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Frame = +2
Query: 143 PEEKRDIVARPQEQIRSIFFFR--CYKHKKLEAC---IMKDIMNTSPRNTLSTTRRP 298
PEE R + ++P E ++ F+R C K L+A IMKD+ + R L RP
Sbjct: 148 PEELRMMRSQPTEAMKMTMFYRYWCLKEAILKATGVGIMKDLNSLDFRVNLQDRYRP 204
>AF003151-4|AAK18918.2| 142|Caenorhabditis elegans Hypothetical
protein D1007.13a protein.
Length = 142
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 96 SPLSSSETGRLPILALMCSKFGSMLSSTYPNS 1
SP S+S T P A + +GS + STYP S
Sbjct: 17 SPASTSSTAYSPPPATSSTTYGSSIPSTYPPS 48
>AF003151-3|ABJ99067.1| 247|Caenorhabditis elegans Hypothetical
protein D1007.13b protein.
Length = 247
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 96 SPLSSSETGRLPILALMCSKFGSMLSSTYPNS 1
SP S+S T P A + +GS + STYP S
Sbjct: 122 SPASTSSTAYSPPPATSSTTYGSSIPSTYPPS 153
>U41038-2|AAX88827.1| 635|Caenorhabditis elegans
Serotonin/octopamine receptor familyprotein 1, isoform b
protein.
Length = 635
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 173 PQEQIRSIFFFRCYKHKKLEACIMKDIMNTSPRNTLST 286
PQ+ RS C K +K+ + + D+M TS +T ST
Sbjct: 574 PQQPTRSYSCVDCKKAEKMLSSDVSDMMTTSTASTAST 611
>U41038-1|AAK29709.2| 683|Caenorhabditis elegans
Serotonin/octopamine receptor familyprotein 1, isoform a
protein.
Length = 683
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 173 PQEQIRSIFFFRCYKHKKLEACIMKDIMNTSPRNTLST 286
PQ+ RS C K +K+ + + D+M TS +T ST
Sbjct: 622 PQQPTRSYSCVDCKKAEKMLSSDVSDMMTTSTASTAST 659
>U13876-11|AAN63395.1| 201|Caenorhabditis elegans Coenzyme q
(ubiquinone) biosynthesisprotein 2, isoform d protein.
Length = 201
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +2
Query: 254 MNTSPRNTLST-TRRPISLTPVQDALLATSPSEIR 355
++ S + +ST T++P+SL P +L+A+SP ++
Sbjct: 29 LDESTKRWISTSTKQPMSLIPTASSLVASSPPNLK 63
>U13876-10|AAN63394.1| 216|Caenorhabditis elegans Coenzyme q
(ubiquinone) biosynthesisprotein 2, isoform c protein.
Length = 216
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +2
Query: 254 MNTSPRNTLST-TRRPISLTPVQDALLATSPSEIR 355
++ S + +ST T++P+SL P +L+A+SP ++
Sbjct: 29 LDESTKRWISTSTKQPMSLIPTASSLVASSPPNLK 63
>U13876-9|AAW88395.1| 356|Caenorhabditis elegans Coenzyme q
(ubiquinone) biosynthesisprotein 2, isoform a protein.
Length = 356
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +2
Query: 254 MNTSPRNTLST-TRRPISLTPVQDALLATSPSEIR 355
++ S + +ST T++P+SL P +L+A+SP ++
Sbjct: 29 LDESTKRWISTSTKQPMSLIPTASSLVASSPPNLK 63
>U13876-8|AAN63396.1| 370|Caenorhabditis elegans Coenzyme q
(ubiquinone) biosynthesisprotein 2, isoform e protein.
Length = 370
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +2
Query: 254 MNTSPRNTLST-TRRPISLTPVQDALLATSPSEIR 355
++ S + +ST T++P+SL P +L+A+SP ++
Sbjct: 29 LDESTKRWISTSTKQPMSLIPTASSLVASSPPNLK 63
>U13876-7|AAW88396.1| 427|Caenorhabditis elegans Coenzyme q
(ubiquinone) biosynthesisprotein 2, isoform b protein.
Length = 427
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +2
Query: 254 MNTSPRNTLST-TRRPISLTPVQDALLATSPSEIR 355
++ S + +ST T++P+SL P +L+A+SP ++
Sbjct: 29 LDESTKRWISTSTKQPMSLIPTASSLVASSPPNLK 63
>AF031415-1|AAC15778.1| 635|Caenorhabditis elegans serotonin
receptor protein.
Length = 635
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 173 PQEQIRSIFFFRCYKHKKLEACIMKDIMNTSPRNTLST 286
PQ+ RS C K +K+ + + D+M TS +T ST
Sbjct: 574 PQQPTRSYSCVDCKKAEKMLSSDVSDMMTTSTASTAST 611
>AF031414-1|AAC15827.1| 683|Caenorhabditis elegans serotonin
receptor protein.
Length = 683
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 173 PQEQIRSIFFFRCYKHKKLEACIMKDIMNTSPRNTLST 286
PQ+ RS C K +K+ + + D+M TS +T ST
Sbjct: 622 PQQPTRSYSCVDCKKAEKMLSSDVSDMMTTSTASTAST 659
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,623,343
Number of Sequences: 27780
Number of extensions: 313631
Number of successful extensions: 813
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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